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Targeted depletion of TRBV9+ T cells as immunotherapy in a patient with ankylosing spondylitis.
Britanova OV, Lupyr KR, Staroverov DB, Shagina IA, Aleksandrov AA, Ustyugov YY, Somov DV, Klimenko A, Shostak NA, Zvyagin IV, Stepanov AV, Merzlyak EM, Davydov AN, Izraelson M, Egorov ES, Bogdanova EA, Vladimirova AK, Iakovlev PA, Fedorenko DA, Ivanov RA, Skvortsova VI, Lukyanov S, Chudakov DM. Britanova OV, et al. Among authors: shagina ia. Nat Med. 2023 Nov;29(11):2731-2736. doi: 10.1038/s41591-023-02613-z. Epub 2023 Oct 23. Nat Med. 2023. PMID: 37872223 Free PMC article.
Functionally specialized human CD4+ T-cell subsets express physicochemically distinct TCRs.
Kasatskaya SA, Ladell K, Egorov ES, Miners KL, Davydov AN, Metsger M, Staroverov DB, Matveyshina EK, Shagina IA, Mamedov IZ, Izraelson M, Shelyakin PV, Britanova OV, Price DA, Chudakov DM. Kasatskaya SA, et al. Among authors: shagina ia. Elife. 2020 Dec 8;9:e57063. doi: 10.7554/eLife.57063. Elife. 2020. PMID: 33289628 Free PMC article.
Naïve Regulatory T Cell Subset Is Altered in X-Linked Agammaglobulinemia.
Shelyakin PV, Lupyr KR, Egorov ES, Kofiadi IA, Staroverov DB, Kasatskaya SA, Kriukova VV, Shagina IA, Merzlyak EM, Nakonechnaya TO, Latysheva EA, Manto IA, Khaitov MR, Lukyanov SA, Chudakov DM, Britanova OV. Shelyakin PV, et al. Among authors: shagina ia. Front Immunol. 2021 Aug 19;12:697307. doi: 10.3389/fimmu.2021.697307. eCollection 2021. Front Immunol. 2021. PMID: 34489944 Free PMC article.
Normalization of full-length-enriched cDNA.
Bogdanova EA, Barsova EV, Shagina IA, Scheglov A, Anisimova V, Vagner LL, Lukyanov SA, Shagin DA. Bogdanova EA, et al. Among authors: shagina ia. Methods Mol Biol. 2011;729:85-98. doi: 10.1007/978-1-61779-065-2_6. Methods Mol Biol. 2011. PMID: 21365485
Normalizing cDNA libraries.
Bogdanov EA, Shagina I, Barsova EV, Kelmanson I, Shagin DA, Lukyanov SA. Bogdanov EA, et al. Curr Protoc Mol Biol. 2010 Apr;Chapter 5:Unit 5.12.1-27. doi: 10.1002/0471142727.mb0512s90. Curr Protoc Mol Biol. 2010. PMID: 20373503
A high-throughput assay for quantitative measurement of PCR errors.
Shagin DA, Shagina IA, Zaretsky AR, Barsova EV, Kelmanson IV, Lukyanov S, Chudakov DM, Shugay M. Shagin DA, et al. Among authors: shagina ia. Sci Rep. 2017 Jun 2;7(1):2718. doi: 10.1038/s41598-017-02727-8. Sci Rep. 2017. PMID: 28578414 Free PMC article.
MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.
Shugay M, Zaretsky AR, Shagin DA, Shagina IA, Volchenkov IA, Shelenkov AA, Lebedin MY, Bagaev DV, Lukyanov S, Chudakov DM. Shugay M, et al. Among authors: shagina ia. PLoS Comput Biol. 2017 May 5;13(5):e1005480. doi: 10.1371/journal.pcbi.1005480. eCollection 2017 May. PLoS Comput Biol. 2017. PMID: 28475621 Free PMC article.
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