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A communal catalogue reveals Earth's multiscale microbial diversity.
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium. Thompson LR, et al. Among authors: shade a. Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1. Nature. 2017. PMID: 29088705 Free PMC article.
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.
Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, Kolker E, Konstantindis K, Kostka J, Kyrpides N, Mackelprang R, McHardy A, Quince C, Raes J, Sczyrba A, Shade A, Stevens R. Gilbert JA, et al. Among authors: shade a. Stand Genomic Sci. 2010 Dec 25;3(3):243-8. doi: 10.4056/sigs.1433550. Stand Genomic Sci. 2010. PMID: 21304727 Free PMC article.
Our microbial selves: what ecology can teach us.
Gonzalez A, Clemente JC, Shade A, Metcalf JL, Song S, Prithiviraj B, Palmer BE, Knight R. Gonzalez A, et al. Among authors: shade a. EMBO Rep. 2011 Jul 1;12(8):775-84. doi: 10.1038/embor.2011.137. EMBO Rep. 2011. PMID: 21720391 Free PMC article. Review.
Characterizing microbial communities through space and time.
Gonzalez A, King A, Robeson MS 2nd, Song S, Shade A, Metcalf JL, Knight R. Gonzalez A, et al. Among authors: shade a. Curr Opin Biotechnol. 2012 Jun;23(3):431-6. doi: 10.1016/j.copbio.2011.11.017. Epub 2011 Dec 7. Curr Opin Biotechnol. 2012. PMID: 22154467 Free PMC article. Review.
Lake microbial communities are resilient after a whole-ecosystem disturbance.
Shade A, Read JS, Youngblut ND, Fierer N, Knight R, Kratz TK, Lottig NR, Roden EE, Stanley EH, Stombaugh J, Whitaker RJ, Wu CH, McMahon KD. Shade A, et al. ISME J. 2012 Dec;6(12):2153-67. doi: 10.1038/ismej.2012.56. Epub 2012 Jun 28. ISME J. 2012. PMID: 22739495 Free PMC article.
Diversity is the question, not the answer.
Shade A. Shade A. ISME J. 2017 Jan;11(1):1-6. doi: 10.1038/ismej.2016.118. Epub 2016 Sep 16. ISME J. 2017. PMID: 27636395 Free PMC article.
85 results