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Large-scale assessment of pros and cons of autopsy-derived or tumor-matched tissues as the norms for gene expression analysis in cancers.
Sorokin M, Buzdin AA, Guryanova A, Efimov V, Suntsova MV, Zolotovskaia MA, Koroleva EV, Sekacheva MI, Tkachev VS, Garazha A, Kremenchutckaya K, Drobyshev A, Seryakov A, Gudkov A, Alekseenko IV, Rakitina O, Kostina MB, Vladimirova U, Moisseev A, Bulgin D, Radomskaya E, Shestakov V, Baklaushev VP, Prassolov V, Shegay PV, Li X, Poddubskaya EV, Gaifullin N. Sorokin M, et al. Among authors: seryakov a. Comput Struct Biotechnol J. 2023 Aug 3;21:3964-3986. doi: 10.1016/j.csbj.2023.07.040. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37635765 Free PMC article.
Pan-cancer antagonistic inhibition pattern of ATM-driven G2/M checkpoint pathway vs other DNA repair pathways.
Zolotovskaia MA, Modestov AA, Suntsova MV, Rachkova AA, Koroleva EV, Poddubskaya EV, Sekacheva MI, Tkachev VS, Garazha AV, Glusker AA, Seryakov AP, Vladimirova US, Rumiantsev PO, Moisseev AA, Zharkov DO, Kuzmin DV, Zhao X, Prassolov VS, Shegay PV, Li X, Steinbichler TB, Kim E, Sorokin MI, Wang Y, Buzdin AA. Zolotovskaia MA, et al. Among authors: seryakov ap. DNA Repair (Amst). 2023 Mar;123:103448. doi: 10.1016/j.dnarep.2023.103448. Epub 2023 Jan 13. DNA Repair (Amst). 2023. PMID: 36657260
Clinically relevant fusion oncogenes: detection and practical implications.
Sorokin M, Rabushko E, Rozenberg JM, Mohammad T, Seryakov A, Sekacheva M, Buzdin A. Sorokin M, et al. Among authors: seryakov a. Ther Adv Med Oncol. 2022 Dec 26;14:17588359221144108. doi: 10.1177/17588359221144108. eCollection 2022. Ther Adv Med Oncol. 2022. PMID: 36601633 Free PMC article. Review.
RNA Sequencing Data for FFPE Tumor Blocks Can Be Used for Robust Estimation of Tumor Mutation Burden in Individual Biosamples.
Sorokin M, Gorelyshev A, Efimov V, Zotova E, Zolotovskaia M, Rabushko E, Kuzmin D, Seryakov A, Kamashev D, Li X, Poddubskaya E, Suntsova M, Buzdin A. Sorokin M, et al. Among authors: seryakov a. Front Oncol. 2021 Sep 28;11:732644. doi: 10.3389/fonc.2021.732644. eCollection 2021. Front Oncol. 2021. PMID: 34650919 Free PMC article.
RNA sequencing for research and diagnostics in clinical oncology.
Buzdin A, Sorokin M, Garazha A, Glusker A, Aleshin A, Poddubskaya E, Sekacheva M, Kim E, Gaifullin N, Giese A, Seryakov A, Rumiantsev P, Moshkovskii S, Moiseev A. Buzdin A, et al. Among authors: seryakov a. Semin Cancer Biol. 2020 Feb;60:311-323. doi: 10.1016/j.semcancer.2019.07.010. Epub 2019 Aug 11. Semin Cancer Biol. 2020. PMID: 31412295 Review.