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Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize.
Hartwig T, Banf M, Prietsch GP, Zhu JY, Mora-Ramírez I, Schippers JHM, Snodgrass SJ, Seetharam AS, Huettel B, Kolkman JM, Yang J, Engelhorn J, Wang ZY. Hartwig T, et al. Among authors: seetharam as. Genome Biol. 2023 May 8;24(1):108. doi: 10.1186/s13059-023-02909-w. Genome Biol. 2023. PMID: 37158941 Free PMC article.
CRISPR interference and priming varies with individual spacer sequences.
Xue C, Seetharam AS, Musharova O, Severinov K, Brouns SJ, Severin AJ, Sashital DG. Xue C, et al. Among authors: seetharam as. Nucleic Acids Res. 2015 Dec 15;43(22):10831-47. doi: 10.1093/nar/gkv1259. Epub 2015 Nov 19. Nucleic Acids Res. 2015. PMID: 26586800 Free PMC article.
Rapid Isolation of Centromeres from Scheffersomyces stipitis.
Cao M, Seetharam AS, Severin AJ, Shao Z. Cao M, et al. Among authors: seetharam as. ACS Synth Biol. 2017 Nov 17;6(11):2028-2034. doi: 10.1021/acssynbio.7b00166. Epub 2017 Sep 5. ACS Synth Biol. 2017. PMID: 28837318
Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
Ou S, Liu J, Chougule KM, Fungtammasan A, Seetharam AS, Stein JC, Llaca V, Manchanda N, Gilbert AM, Wei S, Chin CS, Hufnagel DE, Pedersen S, Snodgrass SJ, Fengler K, Woodhouse M, Walenz BP, Koren S, Phillippy AM, Hannigan BT, Dawe RK, Hirsch CN, Hufford MB, Ware D. Ou S, et al. Among authors: seetharam as. Nat Commun. 2020 May 8;11(1):2288. doi: 10.1038/s41467-020-16037-7. Nat Commun. 2020. PMID: 32385271 Free PMC article.
Gapless assembly of maize chromosomes using long-read technologies.
Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, Michael TP, Hufford MB, Dawe RK. Liu J, et al. Among authors: seetharam as. Genome Biol. 2020 May 20;21(1):121. doi: 10.1186/s13059-020-02029-9. Genome Biol. 2020. PMID: 32434565 Free PMC article.
37 results