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The mzIdentML data standard for mass spectrometry-based proteomics results.
Jones AR, Eisenacher M, Mayer G, Kohlbacher O, Siepen J, Hubbard SJ, Selley JN, Searle BC, Shofstahl J, Seymour SL, Julian R, Binz PA, Deutsch EW, Hermjakob H, Reisinger F, Griss J, Vizcaíno JA, Chambers M, Pizarro A, Creasy D. Jones AR, et al. Among authors: searle bc. Mol Cell Proteomics. 2012 Jul;11(7):M111.014381. doi: 10.1074/mcp.M111.014381. Epub 2012 Feb 27. Mol Cell Proteomics. 2012. PMID: 22375074 Free PMC article.
Thesaurus: quantifying phosphopeptide positional isomers.
Searle BC, Lawrence RT, MacCoss MJ, Villén J. Searle BC, et al. Nat Methods. 2019 Aug;16(8):703-706. doi: 10.1038/s41592-019-0498-4. Epub 2019 Jul 29. Nat Methods. 2019. PMID: 31363206 Free PMC article.
A Review of the Scientific Rigor, Reproducibility, and Transparency Studies Conducted by the ABRF Research Groups.
Mische SM, Fisher NC, Meyn SM, Sol-Church K, Hegstad-Davies RL, Weis-Garcia F, Adams M, Ashton JM, Delventhal KM, Dragon JA, Holmes L, Jagtap P, Kubow KE, Mason CE, Palmblad M, Searle BC, Turck CW, Knudtson KL. Mische SM, et al. Among authors: searle bc. J Biomol Tech. 2020 Apr;31(1):11-26. doi: 10.7171/jbt.20-3101-003. J Biomol Tech. 2020. PMID: 31969795 Free PMC article. Review.
Assessing Protein Sequence Database Suitability Using De Novo Sequencing.
Johnson RS, Searle BC, Nunn BL, Gilmore JM, Phillips M, Amemiya CT, Heck M, MacCoss MJ. Johnson RS, et al. Among authors: searle bc. Mol Cell Proteomics. 2020 Jan;19(1):198-208. doi: 10.1074/mcp.TIR119.001752. Epub 2019 Nov 15. Mol Cell Proteomics. 2020. PMID: 31732549 Free PMC article.
50 results