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CAMISIM: simulating metagenomes and microbial communities.
Fritz A, Hofmann P, Majda S, Dahms E, Dröge J, Fiedler J, Lesker TR, Belmann P, DeMaere MZ, Darling AE, Sczyrba A, Bremges A, McHardy AC. Fritz A, et al. Among authors: sczyrba a. Microbiome. 2019 Feb 8;7(1):17. doi: 10.1186/s40168-019-0633-6. Microbiome. 2019. PMID: 30736849 Free PMC article.
Insights into the phylogeny and coding potential of microbial dark matter.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T. Rinke C, et al. Among authors: sczyrba a. Nature. 2013 Jul 25;499(7459):431-7. doi: 10.1038/nature12352. Epub 2013 Jul 14. Nature. 2013. PMID: 23851394 Free article.
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing.
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A. Wibberg D, et al. Among authors: sczyrba a. J Biotechnol. 2016 Aug 20;232:61-8. doi: 10.1016/j.jbiotec.2016.04.008. Epub 2016 Apr 6. J Biotechnol. 2016. PMID: 27060556
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment.
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A. Maus I, et al. Among authors: sczyrba a. J Biotechnol. 2016 Aug 20;232:50-60. doi: 10.1016/j.jbiotec.2016.05.001. Epub 2016 May 7. J Biotechnol. 2016. PMID: 27165504
101 results