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Integrating pathways of Parkinson's disease in a molecular interaction map.
Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, Del Sol A, Schneider R, Kitano H, Balling R. Fujita KA, et al. Among authors: schneider r. Mol Neurobiol. 2014 Feb;49(1):88-102. doi: 10.1007/s12035-013-8489-4. Epub 2013 Jul 7. Mol Neurobiol. 2014. PMID: 23832570 Free PMC article. Review.
Arena3D: visualization of biological networks in 3D.
Pavlopoulos GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R. Pavlopoulos GA, et al. Among authors: schneider r. BMC Syst Biol. 2008 Nov 28;2:104. doi: 10.1186/1752-0509-2-104. BMC Syst Biol. 2008. PMID: 19040715 Free PMC article.
Martini: using literature keywords to compare gene sets.
Soldatos TG, O'Donoghue SI, Satagopam VP, Jensen LJ, Brown NP, Barbosa-Silva A, Schneider R. Soldatos TG, et al. Among authors: schneider r. Nucleic Acids Res. 2010 Jan;38(1):26-38. doi: 10.1093/nar/gkp876. Epub 2009 Oct 25. Nucleic Acids Res. 2010. PMID: 19858102 Free PMC article.
Caipirini: using gene sets to rank literature.
Soldatos TG, O'Donoghue SI, Satagopam VP, Barbosa-Silva A, Pavlopoulos GA, Wanderley-Nogueira AC, Soares-Cavalcanti NM, Schneider R. Soldatos TG, et al. Among authors: schneider r. BioData Min. 2012 Feb 1;5(1):1. doi: 10.1186/1756-0381-5-1. BioData Min. 2012. PMID: 22297131 Free PMC article.
EnrichNet: network-based gene set enrichment analysis.
Glaab E, Baudot A, Krasnogor N, Schneider R, Valencia A. Glaab E, et al. Among authors: schneider r. Bioinformatics. 2012 Sep 15;28(18):i451-i457. doi: 10.1093/bioinformatics/bts389. Bioinformatics. 2012. PMID: 22962466 Free PMC article.
Signaling in insulin-secreting MIN6 pseudoislets and monolayer cells.
Chowdhury A, Satagopam VP, Manukyan L, Artemenko KA, Fung YM, Schneider R, Bergquist J, Bergsten P. Chowdhury A, et al. Among authors: schneider r. J Proteome Res. 2013 Dec 6;12(12):5954-62. doi: 10.1021/pr400864w. Epub 2013 Sep 30. J Proteome Res. 2013. PMID: 24006944
3,869 results