Schmidt B - Search Results

1

AFS: identification and quantification of species composition by metagenomic sequencing.

Liu Y, Ripp F, Koeppel R, Schmidt H, Hellmann SL, Weber M, Krombholz CF, Schmidt B, Hankeln T. Liu Y, et al. Among authors: schmidt b, schmidt h. Bioinformatics. 2017 May 1;33(9):1396-1398. doi: 10.1093/bioinformatics/btw822. Bioinformatics. 2017. PMID: 28453677

2

CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units.

Liu Y, Maskell DL, Schmidt B. Liu Y, et al. Among authors: schmidt b. BMC Res Notes. 2009 May 6;2:73. doi: 10.1186/1756-0500-2-73. BMC Res Notes. 2009. PMID: 19416548 Free PMC article.

3

CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Among authors: schmidt b. BMC Res Notes. 2010 Apr 6;3:93. doi: 10.1186/1756-0500-3-93. BMC Res Notes. 2010. PMID: 20370891 Free PMC article.

4

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Among authors: schmidt b. Bioinformatics. 2010 Aug 15;26(16):1958-64. doi: 10.1093/bioinformatics/btq338. Epub 2010 Jun 23. Bioinformatics. 2010. PMID: 20576627

5

CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments.

Kuttippurathu L, Hsing M, Liu Y, Schmidt B, Maskell DL, Lee K, He A, Pu WT, Kong SW. Kuttippurathu L, et al. Among authors: schmidt b. Bioinformatics. 2011 Mar 1;27(5):715-7. doi: 10.1093/bioinformatics/btq707. Epub 2010 Dec 23. Bioinformatics. 2011. PMID: 21183585 Free PMC article.

6

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Among authors: schmidt b. BMC Bioinformatics. 2011 Mar 29;12:85. doi: 10.1186/1471-2105-12-85. BMC Bioinformatics. 2011. PMID: 21447171 Free PMC article.

7

Parallelized short read assembly of large genomes using de Bruijn graphs.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Among authors: schmidt b. BMC Bioinformatics. 2011 Aug 25;12:354. doi: 10.1186/1471-2105-12-354. BMC Bioinformatics. 2011. PMID: 21867511 Free PMC article.

8

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Among authors: schmidt b. Bioinformatics. 2012 Jul 15;28(14):1830-7. doi: 10.1093/bioinformatics/bts276. Epub 2012 May 9. Bioinformatics. 2012. PMID: 22576173

9

DySC: software for greedy clustering of 16S rRNA reads.

Zheng Z, Kramer S, Schmidt B. Zheng Z, et al. Among authors: schmidt b. Bioinformatics. 2012 Aug 15;28(16):2182-3. doi: 10.1093/bioinformatics/bts355. Epub 2012 Jun 23. Bioinformatics. 2012. PMID: 22730435

10

Long read alignment based on maximal exact match seeds.

Liu Y, Schmidt B. Liu Y, et al. Among authors: schmidt b. Bioinformatics. 2012 Sep 15;28(18):i318-i324. doi: 10.1093/bioinformatics/bts414. Bioinformatics. 2012. PMID: 22962447 Free PMC article.

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