Scherer M - Search Results

1

DNA methylation-based prediction of response to immune checkpoint inhibition in metastatic melanoma.

Filipski K, Scherer M, Zeiner KN, Bucher A, Kleemann J, Jurmeister P, Hartung TI, Meissner M, Plate KH, Fenton TR, Walter J, Tierling S, Schilling B, Zeiner PS, Harter PN. Filipski K, et al. Among authors: scherer m. J Immunother Cancer. 2021 Jul;9(7):e002226. doi: 10.1136/jitc-2020-002226. J Immunother Cancer. 2021. PMID: 34281986 Free PMC article.

2

RnBeads 2.0: comprehensive analysis of DNA methylation data.

Müller F, Scherer M, Assenov Y, Lutsik P, Walter J, Lengauer T, Bock C. Müller F, et al. Among authors: scherer m. Genome Biol. 2019 Mar 14;20(1):55. doi: 10.1186/s13059-019-1664-9. Genome Biol. 2019. PMID: 30871603 Free PMC article.

3

Weighted elastic net for unsupervised domain adaptation with application to age prediction from DNA methylation data.

Handl L, Jalali A, Scherer M, Eggeling R, Pfeifer N. Handl L, et al. Among authors: scherer m. Bioinformatics. 2019 Jul 15;35(14):i154-i163. doi: 10.1093/bioinformatics/btz338. Bioinformatics. 2019. PMID: 31510704 Free PMC article.

4

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.

Decamps C, Privé F, Bacher R, Jost D, Waguet A; HADACA consortium; Houseman EA, Lurie E, Lutsik P, Milosavljevic A, Scherer M, Blum MGB, Richard M. Decamps C, et al. Among authors: scherer m. BMC Bioinformatics. 2020 Jan 13;21(1):16. doi: 10.1186/s12859-019-3307-2. BMC Bioinformatics. 2020. PMID: 31931698 Free PMC article.

5

Quantitative comparison of within-sample heterogeneity scores for DNA methylation data.

Scherer M, Nebel A, Franke A, Walter J, Lengauer T, Bock C, Müller F, List M. Scherer M, et al. Nucleic Acids Res. 2020 May 7;48(8):e46. doi: 10.1093/nar/gkaa120. Nucleic Acids Res. 2020. PMID: 32103242 Free PMC article.

6

Reference-free deconvolution, visualization and interpretation of complex DNA methylation data using DecompPipeline, MeDeCom and FactorViz.

Scherer M, Nazarov PV, Toth R, Sahay S, Kaoma T, Maurer V, Vedeneev N, Plass C, Lengauer T, Walter J, Lutsik P. Scherer M, et al. Nat Protoc. 2020 Oct;15(10):3240-3263. doi: 10.1038/s41596-020-0369-6. Epub 2020 Sep 25. Nat Protoc. 2020. PMID: 32978601

7

Prenatal exposure to endocrine disrupting chemicals is associated with altered DNA methylation in cord blood.

Mattonet K, Nowack-Weyers N, Vogel V, Moser D, Tierling S, Kasper-Sonnenberg M, Wilhelm M, Scherer M, Walter J, Hengstler JG, Schölmerich A, Kumsta R. Mattonet K, et al. Among authors: scherer m. Epigenetics. 2022 Sep;17(9):935-952. doi: 10.1080/15592294.2021.1975917. Epub 2021 Sep 16. Epigenetics. 2022. PMID: 34529553 Free PMC article.

8

Identification of tissue-specific and common methylation quantitative trait loci in healthy individuals using MAGAR.

Scherer M, Gasparoni G, Rahmouni S, Shashkova T, Arnoux M, Louis E, Nostaeva A, Avalos D, Dermitzakis ET, Aulchenko YS, Lengauer T, Lyons PA, Georges M, Walter J. Scherer M, et al. Epigenetics Chromatin. 2021 Sep 16;14(1):44. doi: 10.1186/s13072-021-00415-6. Epigenetics Chromatin. 2021. PMID: 34530905 Free PMC article.

9

Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics.

Tierling S, Jürgens-Wemheuer WM, Leismann A, Becker-Kettern J, Scherer M, Wrede A, Breuskin D, Urbschat S, Sippl C, Oertel J, Schulz-Schaeffer WJ, Walter J. Tierling S, et al. Among authors: scherer m. Clin Epigenetics. 2022 Feb 18;14(1):26. doi: 10.1186/s13148-022-01244-4. Clin Epigenetics. 2022. PMID: 35180887 Free PMC article.

10

Alterations in the hepatocyte epigenetic landscape in steatosis.

Maji RK, Czepukojc B, Scherer M, Tierling S, Cadenas C, Gianmoena K, Gasparoni N, Nordström K, Gasparoni G, Laggai S, Yang X, Sinha A, Ebert P, Falk-Paulsen M, Kinkley S, Hoppstädter J, Chung HR, Rosenstiel P, Hengstler JG, Walter J, Schulz MH, Kessler SM, Kiemer AK. Maji RK, et al. Among authors: scherer m. Epigenetics Chromatin. 2023 Jul 6;16(1):30. doi: 10.1186/s13072-023-00504-8. Epigenetics Chromatin. 2023. PMID: 37415213 Free PMC article.

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