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T Cell Epitope Prediction and Its Application to Immunotherapy.
Schaap-Johansen AL, Vujović M, Borch A, Hadrup SR, Marcatili P. Schaap-Johansen AL, et al. Front Immunol. 2021 Sep 15;12:712488. doi: 10.3389/fimmu.2021.712488. eCollection 2021. Front Immunol. 2021. PMID: 34603286 Free PMC article. Review.
T cell receptor sequence clustering and antigen specificity.
Vujovic M, Degn KF, Marin FI, Schaap-Johansen AL, Chain B, Andresen TL, Kaplinsky J, Marcatili P. Vujovic M, et al. Among authors: schaap johansen al. Comput Struct Biotechnol J. 2020 Aug 5;18:2166-2173. doi: 10.1016/j.csbj.2020.06.041. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32952933 Free PMC article. Review.
The Protein-Templated Synthesis of Enzyme-Generated Aptamers.
Vacacela J, Schaap-Johansen AL, Manikova P, Marcatili P, Prado M, Sun Y, Ashley J. Vacacela J, et al. Among authors: schaap johansen al. Angew Chem Int Ed Engl. 2022 Apr 19;61(17):e202201061. doi: 10.1002/anie.202201061. Epub 2022 Mar 4. Angew Chem Int Ed Engl. 2022. PMID: 35167174 Free PMC article.
IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition.
Borch A, Carri I, Reynisson B, Alvarez HMG, Munk KK, Montemurro A, Kristensen NP, Tvingsholm SA, Holm JS, Heeke C, Moss KH, Hansen UK, Schaap-Johansen AL, Bagger FO, de Lima VAB, Rohrberg KS, Funt SA, Donia M, Svane IM, Lassen U, Barra C, Nielsen M, Hadrup SR. Borch A, et al. Among authors: schaap johansen al. Front Immunol. 2024 Apr 3;15:1360281. doi: 10.3389/fimmu.2024.1360281. eCollection 2024. Front Immunol. 2024. PMID: 38633261 Free PMC article.