Schöpflin R - Search Results

1

Enhancer hijacking at the ARHGAP36 locus is associated with connective tissue to bone transformation.

Melo US, Jatzlau J, Prada-Medina CA, Flex E, Hartmann S, Ali S, Schöpflin R, Bernardini L, Ciolfi A, Moeinzadeh MH, Klever MK, Altay A, Vallecillo-García P, Carpentieri G, Delledonne M, Ort MJ, Schwestka M, Ferrero GB, Tartaglia M, Brusco A, Gossen M, Strunk D, Geißler S, Mundlos S, Stricker S, Knaus P, Giorgio E, Spielmann M. Melo US, et al. Among authors: schopflin r. Nat Commun. 2023 Apr 11;14(1):2034. doi: 10.1038/s41467-023-37585-8. Nat Commun. 2023. PMID: 37041138 Free PMC article.

2

DNA-DNA interactions in tight supercoils are described by a small effective charge density.

Maffeo C, Schöpflin R, Brutzer H, Stehr R, Aksimentiev A, Wedemann G, Seidel R. Maffeo C, et al. Among authors: schopflin r. Phys Rev Lett. 2010 Oct 8;105(15):158101. doi: 10.1103/PhysRevLett.105.158101. Epub 2010 Oct 4. Phys Rev Lett. 2010. PMID: 21230940 Free PMC article.

3

Modeling nucleosome position distributions from experimental nucleosome positioning maps.

Schöpflin R, Teif VB, Müller O, Weinberg C, Rippe K, Wedemann G. Schöpflin R, et al. Bioinformatics. 2013 Oct 1;29(19):2380-6. doi: 10.1093/bioinformatics/btt404. Epub 2013 Jul 11. Bioinformatics. 2013. PMID: 23846748

4

Probing the elasticity of DNA on short length scales by modeling supercoiling under tension.

Schöpflin R, Brutzer H, Müller O, Seidel R, Wedemann G. Schöpflin R, et al. Biophys J. 2012 Jul 18;103(2):323-30. doi: 10.1016/j.bpj.2012.05.050. Epub 2012 Jul 17. Biophys J. 2012. PMID: 22853910 Free PMC article.

5

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.

Love MI, Huska MR, Jurk M, Schöpflin R, Starick SR, Schwahn K, Cooper SB, Yamamoto KR, Thomas-Chollier M, Vingron M, Meijsing SH. Love MI, et al. Among authors: schopflin r. Nucleic Acids Res. 2017 Feb 28;45(4):1805-1819. doi: 10.1093/nar/gkw1163. Nucleic Acids Res. 2017. PMID: 27903902 Free PMC article.

6

Changing chromatin fiber conformation by nucleosome repositioning.

Müller O, Kepper N, Schöpflin R, Ettig R, Rippe K, Wedemann G. Müller O, et al. Among authors: schopflin r. Biophys J. 2014 Nov 4;107(9):2141-50. doi: 10.1016/j.bpj.2014.09.026. Biophys J. 2014. PMID: 25418099 Free PMC article.

7

Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Stehr R, Schöpflin R, Ettig R, Kepper N, Rippe K, Wedemann G. Stehr R, et al. Among authors: schopflin r. Biophys J. 2010 Mar 17;98(6):1028-37. doi: 10.1016/j.bpj.2009.11.040. Biophys J. 2010. PMID: 20303860 Free PMC article.

8

Formation of new chromatin domains determines pathogenicity of genomic duplications.

Franke M, Ibrahim DM, Andrey G, Schwarzer W, Heinrich V, Schöpflin R, Kraft K, Kempfer R, Jerković I, Chan WL, Spielmann M, Timmermann B, Wittler L, Kurth I, Cambiaso P, Zuffardi O, Houge G, Lambie L, Brancati F, Pombo A, Vingron M, Spitz F, Mundlos S. Franke M, et al. Among authors: schopflin r. Nature. 2016 Oct 13;538(7624):265-269. doi: 10.1038/nature19800. Epub 2016 Oct 5. Nature. 2016. PMID: 27706140

9

Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding.

Andrey G, Schöpflin R, Jerković I, Heinrich V, Ibrahim DM, Paliou C, Hochradel M, Timmermann B, Haas S, Vingron M, Mundlos S. Andrey G, et al. Among authors: schopflin r. Genome Res. 2017 Feb;27(2):223-233. doi: 10.1101/gr.213066.116. Epub 2016 Dec 6. Genome Res. 2017. PMID: 27923844 Free PMC article.

10

Polymer physics predicts the effects of structural variants on chromatin architecture.

Bianco S, Lupiáñez DG, Chiariello AM, Annunziatella C, Kraft K, Schöpflin R, Wittler L, Andrey G, Vingron M, Pombo A, Mundlos S, Nicodemi M. Bianco S, et al. Among authors: schopflin r. Nat Genet. 2018 May;50(5):662-667. doi: 10.1038/s41588-018-0098-8. Epub 2018 Apr 16. Nat Genet. 2018. PMID: 29662163

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