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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples.
de Vries JJC, Brown JR, Fischer N, Sidorov IA, Morfopoulou S, Huang J, Munnink BBO, Sayiner A, Bulgurcu A, Rodriguez C, Gricourt G, Keyaerts E, Beller L, Bachofen C, Kubacki J, Samuel C, Florian L, Dennis S, Beer M, Hoeper D, Huber M, Kufner V, Zaheri M, Lebrand A, Papa A, van Boheemen S, Kroes ACM, Breuer J, Lopez-Labrador FX, Claas ECJ. de Vries JJC, et al. Among authors: sayiner a. J Clin Virol. 2021 Aug;141:104908. doi: 10.1016/j.jcv.2021.104908. Epub 2021 Jul 8. J Clin Virol. 2021. PMID: 34273858 Free PMC article.
Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure.
López-Labrador FX, Brown JR, Fischer N, Harvala H, Van Boheemen S, Cinek O, Sayiner A, Madsen TV, Auvinen E, Kufner V, Huber M, Rodriguez C, Jonges M, Hönemann M, Susi P, Sousa H, Klapper PE, Pérez-Cataluňa A, Hernandez M, Molenkamp R, der Hoek LV, Schuurman R, Couto N, Leuzinger K, Simmonds P, Beer M, Höper D, Kamminga S, Feltkamp MCW, Rodríguez-Díaz J, Keyaerts E, Nielsen XC, Puchhammer-Stöckl E, Kroes ACM, Buesa J, Breuer J, Claas ECJ, de Vries JJC; ESCV Network on Next-Generation Sequencing. López-Labrador FX, et al. Among authors: sayiner a. J Clin Virol. 2021 Jan;134:104691. doi: 10.1016/j.jcv.2020.104691. Epub 2020 Nov 18. J Clin Virol. 2021. PMID: 33278791 Free article.
Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting.
de Vries JJC, Brown JR, Couto N, Beer M, Le Mercier P, Sidorov I, Papa A, Fischer N, Oude Munnink BB, Rodriquez C, Zaheri M, Sayiner A, Hönemann M, Cataluna AP, Carbo EC, Bachofen C, Kubacki J, Schmitz D, Tsioka K, Matamoros S, Höper D, Hernandez M, Puchhammer-Stöckl E, Lebrand A, Huber M, Simmonds P, Claas ECJ, López-Labrador FX; ESCV Network on Next-Generation Sequencing. de Vries JJC, et al. Among authors: sayiner a. J Clin Virol. 2021 May;138:104812. doi: 10.1016/j.jcv.2021.104812. Epub 2021 Mar 26. J Clin Virol. 2021. PMID: 33819811 Free article.
An analysis of antibody response following the second dose of CoronaVac and humoral response after booster dose with BNT162b2 or CoronaVac among healthcare workers in Turkey.
Çağlayan D, Süner AF, Şiyve N, Güzel I, Irmak Ç, Işik E, Appak Ö, Çelik M, Öztürk G, Alp Çavuş S, Ergör G, Sayiner A, Ergör A, Demiral Y, Kiliç B. Çağlayan D, et al. Among authors: sayiner a. J Med Virol. 2022 May;94(5):2212-2221. doi: 10.1002/jmv.27620. Epub 2022 Feb 3. J Med Virol. 2022. PMID: 35075655 Free PMC article.
COVID-19 Pandemic Action Plan of a University Hospital.
Yapar N, Uçan ES, Bayraktar F, Gökmen N, Sayıner A, Kuruüzüm Z, Bayram B, Alp-Çavuş S, Kılınç O, Avkan-Oğuz V, Savran Y, Küçükgüçlü S, Celiloğlu M. Yapar N, et al. Among authors: sayiner a. Turk Thorac J. 2021 Jan;22(1):95-98. doi: 10.5152/TurkThoracJ.2021.20141. Epub 2021 Jan 1. Turk Thorac J. 2021. PMID: 33646113 Free PMC article.
Pneumonia severity indices predict prognosis in coronavirus disease-2019.
Ucan ES, Ozgen Alpaydin A, Ozuygur SS, Ercan S, Unal B, Sayiner AA, Ergan B, Gokmen N, Savran Y, Kilinc O, Avkan Oguz V; DEU COVID Study Group. Ucan ES, et al. Among authors: sayiner aa. Respir Med Res. 2021 May;79:100826. doi: 10.1016/j.resmer.2021.100826. Epub 2021 Apr 27. Respir Med Res. 2021. PMID: 33971434 Free PMC article.
Prevalence of Gastrointestinal Symptoms and Clinical Outcomes in Hospitalized Coronavirus Disease 2019 Patients: A Single-Center Study from Turkey.
Dolu S, Bengi G, Avkan-Oğuz V, Tertemiz KC, Gezer NS, Çavuş SA, Alpaydın AÖ, Kuruüzüm Z, Ergan B, Sevinç C, Ömeroğlu Şimsek G, Kılınç O, Örmen M, Sayıner A, Somalı I, Çavdar C, Can G, Demir T, Akarsu M, Savran Y, Soytürk M. Dolu S, et al. Among authors: sayiner a. Turk J Gastroenterol. 2022 Nov;33(11):955-963. doi: 10.5152/tjg.2022.21484. Turk J Gastroenterol. 2022. PMID: 35946895 Free PMC article.
150 results