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Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Nat Methods. 2020 Jul;17(7):665-680. doi: 10.1038/s41592-020-0848-2. Epub 2020 Jun 1.
Nat Methods. 2020.
PMID: 32483333
Free PMC article.
Review.
Protocols for Molecular Modeling with Rosetta3 and RosettaScripts.
Bender BJ, Cisneros A 3rd, Duran AM, Finn JA, Fu D, Lokits AD, Mueller BK, Sangha AK, Sauer MF, Sevy AM, Sliwoski G, Sheehan JH, DiMaio F, Meiler J, Moretti R.
Bender BJ, et al. Among authors: sauer mf.
Biochemistry. 2016 Aug 30;55(34):4748-63. doi: 10.1021/acs.biochem.6b00444. Epub 2016 Aug 16.
Biochemistry. 2016.
PMID: 27490953
Free PMC article.
Review.
Item in Clipboard
Multi-state design of flexible proteins predicts sequences optimal for conformational change.
Sauer MF, Sevy AM, Crowe JE Jr, Meiler J.
Sauer MF, et al.
PLoS Comput Biol. 2020 Feb 7;16(2):e1007339. doi: 10.1371/journal.pcbi.1007339. eCollection 2020 Feb.
PLoS Comput Biol. 2020.
PMID: 32032348
Free PMC article.
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Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design.
Schoeder CT, Schmitz S, Adolf-Bryfogle J, Sevy AM, Finn JA, Sauer MF, Bozhanova NG, Mueller BK, Sangha AK, Bonet J, Sheehan JH, Kuenze G, Marlow B, Smith ST, Woods H, Bender BJ, Martina CE, Del Alamo D, Kodali P, Gulsevin A, Schief WR, Correia BE, Crowe JE Jr, Meiler J, Moretti R.
Schoeder CT, et al. Among authors: sauer mf.
Biochemistry. 2021 Mar 23;60(11):825-846. doi: 10.1021/acs.biochem.0c00912. Epub 2021 Mar 11.
Biochemistry. 2021.
PMID: 33705117
Free PMC article.
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Structural basis for nonneutralizing antibody competition at antigenic site II of the respiratory syncytial virus fusion protein.
Mousa JJ, Sauer MF, Sevy AM, Finn JA, Bates JT, Alvarado G, King HG, Loerinc LB, Fong RH, Doranz BJ, Correia BE, Kalyuzhniy O, Wen X, Jardetzky TS, Schief WR, Ohi MD, Meiler J, Crowe JE Jr.
Mousa JJ, et al. Among authors: sauer mf.
Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6849-E6858. doi: 10.1073/pnas.1609449113. Epub 2016 Oct 17.
Proc Natl Acad Sci U S A. 2016.
PMID: 27791117
Free PMC article.
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The bHLH transcription factor Tcf21 is required for lineage-specific EMT of cardiac fibroblast progenitors.
Acharya A, Baek ST, Huang G, Eskiocak B, Goetsch S, Sung CY, Banfi S, Sauer MF, Olsen GS, Duffield JS, Olson EN, Tallquist MD.
Acharya A, et al. Among authors: sauer mf.
Development. 2012 Jun;139(12):2139-49. doi: 10.1242/dev.079970. Epub 2012 May 9.
Development. 2012.
PMID: 22573622
Free PMC article.
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