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Page 1
Grand challenges in bioinformatics education and training.
Işık EB, Brazas MD, Schwartz R, Gaeta B, Palagi PM, van Gelder CWG, Suravajhala P, Singh H, Morgan SL, Zahroh H, Ling M, Satagopam VP, McGrath A, Nakai K, Tan TW, Gao G, Mulder N, Schönbach C, Zheng Y, De Las Rivas J, Khan AM. Işık EB, et al. Among authors: satagopam vp. Nat Biotechnol. 2023 Aug;41(8):1171-1174. doi: 10.1038/s41587-023-01891-9. Nat Biotechnol. 2023. PMID: 37568018 No abstract available.
DOME: recommendations for supervised machine learning validation in biology.
Walsh I, Fishman D, Garcia-Gasulla D, Titma T, Pollastri G; ELIXIR Machine Learning Focus Group; Harrow J, Psomopoulos FE, Tosatto SCE. Walsh I, et al. Nat Methods. 2021 Oct;18(10):1122-1127. doi: 10.1038/s41592-021-01205-4. Nat Methods. 2021. PMID: 34316068 Free article. No abstract available.
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, Hiroi NF, Hu F, Pham N, Ehrhart F, Willighagen EL, Valdeolivas A, Dugourd A, Messina F, Esteban-Medina M, Peña-Chilet M, Rian K, Soliman S, Aghamiri SS, Puniya BL, Naldi A, Helikar T, Singh V, Fernández MF, Bermudez V, Tsirvouli E, Montagud A, Noël V, Ponce-de-Leon M, Maier D, Bauch A, Gyori BM, Bachman JA, Luna A, Piñero J, Furlong LI, Balaur I, Rougny A, Jarosz Y, Overall RW, Phair R, Perfetto L, Matthews L, Rex DAB, Orlic-Milacic M, Gomez LCM, De Meulder B, Ravel JM, Jassal B, Satagopam V, Wu G, Golebiewski M, Gawron P, Calzone L, Beckmann JS, Evelo CT, D'Eustachio P, Schreiber F, Saez-Rodriguez J, Dopazo J, Kuiper M, Valencia A, Wolkenhauer O, Kitano H, Barillot E, Auffray C, Balling R, Schneider R; COVID-19 Disease Map Community. Niarakis A, et al. Front Immunol. 2024 Feb 13;14:1282859. doi: 10.3389/fimmu.2023.1282859. eCollection 2023. Front Immunol. 2024. PMID: 38414974 Free PMC article.
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.
Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, Satagopam V, Schmitz MH, Chapuis C, Gerlich DW, Schneider R, Eils R, Huber W, Peters JM, Hyman AA, Durbin R, Pepperkok R, Ellenberg J. Neumann B, et al. Nature. 2010 Apr 1;464(7289):721-7. doi: 10.1038/nature08869. Nature. 2010. PMID: 20360735 Free PMC article.
A draft network of ligand-receptor-mediated multicellular signalling in human.
Ramilowski JA, Goldberg T, Harshbarger J, Kloppmann E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR. Ramilowski JA, et al. Among authors: satagopam vp. Nat Commun. 2015 Jul 22;6:7866. doi: 10.1038/ncomms8866. Nat Commun. 2015. PMID: 26198319 Free PMC article.
Confronting the catalytic dark matter encoded by sequenced genomes.
Ellens KW, Christian N, Singh C, Satagopam VP, May P, Linster CL. Ellens KW, et al. Among authors: satagopam vp. Nucleic Acids Res. 2017 Nov 16;45(20):11495-11514. doi: 10.1093/nar/gkx937. Nucleic Acids Res. 2017. PMID: 29059321 Free PMC article.
Integrating pathways of Parkinson's disease in a molecular interaction map.
Fujita KA, Ostaszewski M, Matsuoka Y, Ghosh S, Glaab E, Trefois C, Crespo I, Perumal TM, Jurkowski W, Antony PM, Diederich N, Buttini M, Kodama A, Satagopam VP, Eifes S, Del Sol A, Schneider R, Kitano H, Balling R. Fujita KA, et al. Among authors: satagopam vp. Mol Neurobiol. 2014 Feb;49(1):88-102. doi: 10.1007/s12035-013-8489-4. Epub 2013 Jul 7. Mol Neurobiol. 2014. PMID: 23832570 Free PMC article. Review.
48 results