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The Translational Data Catalog - discoverable biomedical datasets.
Welter D, Rocca-Serra P, Grouès V, Sallam N, Ancien F, Shabani A, Asariardakani S, Alper P, Ghosh S, Burdett T, Sansone SA, Gu W, Satagopam V. Welter D, et al. Among authors: satagopam v. Sci Data. 2023 Jul 20;10(1):470. doi: 10.1038/s41597-023-02258-0. Sci Data. 2023. PMID: 37474618 Free PMC article.
The future of metabolomics in ELIXIR.
van Rijswijk M, Beirnaert C, Caron C, Cascante M, Dominguez V, Dunn WB, Ebbels TMD, Giacomoni F, Gonzalez-Beltran A, Hankemeier T, Haug K, Izquierdo-Garcia JL, Jimenez RC, Jourdan F, Kale N, Klapa MI, Kohlbacher O, Koort K, Kultima K, Le Corguillé G, Moreno P, Moschonas NK, Neumann S, O'Donovan C, Reczko M, Rocca-Serra P, Rosato A, Salek RM, Sansone SA, Satagopam V, Schober D, Shimmo R, Spicer RA, Spjuth O, Thévenot EA, Viant MR, Weber RJM, Willighagen EL, Zanetti G, Steinbeck C. van Rijswijk M, et al. Among authors: satagopam v. F1000Res. 2017 Sep 6;6:ELIXIR-1649. doi: 10.12688/f1000research.12342.2. eCollection 2017. F1000Res. 2017. PMID: 29043062 Free PMC article.
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium.
Gu W, Yildirimman R, Van der Stuyft E, Verbeeck D, Herzinger S, Satagopam V, Barbosa-Silva A, Schneider R, Lange B, Lehrach H, Guo Y, Henderson D, Rowe A; IMI OncoTrack and the IMI eTRIKS consortia. Gu W, et al. Among authors: satagopam v. BMC Bioinformatics. 2019 Apr 1;20(1):164. doi: 10.1186/s12859-019-2748-y. BMC Bioinformatics. 2019. PMID: 30935364 Free PMC article.
Road to effective data curation for translational research.
Gu W, Hasan S, Rocca-Serra P, Satagopam VP. Gu W, et al. Drug Discov Today. 2021 Mar;26(3):626-630. doi: 10.1016/j.drudis.2020.12.007. Epub 2020 Dec 15. Drug Discov Today. 2021. PMID: 33338655 Free article. Review.
COBREXA.jl: constraint-based reconstruction and exascale analysis.
Kratochvíl M, Heirendt L, Wilken SE, Pusa T, Arreckx S, Noronha A, van Aalst M, Satagopam VP, Ebenhöh O, Schneider R, Trefois C, Gu W. Kratochvíl M, et al. Bioinformatics. 2022 Jan 27;38(4):1171-1172. doi: 10.1093/bioinformatics/btab782. Bioinformatics. 2022. PMID: 34791064 Free PMC article.
77 results