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"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.
David R, Rybina A, Burel JM, Heriche JK, Audergon P, Boiten JW, Coppens F, Crockett S, Exter K, Fahrner S, Fratelli M, Goble C, Gormanns P, Grantner T, Grüning B, Gurwitz KT, Hancock JM, Harmse H, Holub P, Juty N, Karnbach G, Karoune E, Keppler A, Klemeier J, Lancelotti C, Legras JL, Lister AL, Longo DL, Ludwig R, Madon B, Massimi M, Matser V, Matteoni R, Mayrhofer MT, Ohmann C, Panagiotopoulou M, Parkinson H, Perseil I, Pfander C, Pieruschka R, Raess M, Rauber A, Richard AS, Romano P, Rosato A, Sánchez-Pla A, Sansone SA, Sarkans U, Serrano-Solano B, Tang J, Tanoli Z, Tedds J, Wagener H, Weise M, Westerhoff HV, Wittner R, Ewbank J, Blomberg N, Gribbon P. David R, et al. Among authors: sarkans u. EMBO J. 2023 Dec 1;42(23):e115008. doi: 10.15252/embj.2023115008. Epub 2023 Nov 15. EMBO J. 2023. PMID: 37964598 Free PMC article.
The BioStudies database.
McEntyre J, Sarkans U, Brazma A. McEntyre J, et al. Among authors: sarkans u. Mol Syst Biol. 2015 Dec 23;11(12):847. doi: 10.15252/msb.20156658. Mol Syst Biol. 2015. PMID: 26700850 Free PMC article.
A call for public archives for biological image data.
Ellenberg J, Swedlow JR, Barlow M, Cook CE, Sarkans U, Patwardhan A, Brazma A, Birney E. Ellenberg J, et al. Among authors: sarkans u. Nat Methods. 2018 Nov;15(11):849-854. doi: 10.1038/s41592-018-0195-8. Nat Methods. 2018. PMID: 30377375 Free PMC article.
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A. Sarkans U, et al. Nat Methods. 2021 Dec;18(12):1418-1422. doi: 10.1038/s41592-021-01166-8. Nat Methods. 2021. PMID: 34021280 Free PMC article.
Providing open imaging data at scale: An EMBL-EBI perspective.
Hartley M, Iudin A, Padwardhan A, Sarkans U, Yoldaş AK, Kleywegt GJ. Hartley M, et al. Among authors: sarkans u. Histochem Cell Biol. 2023 Sep;160(3):211-221. doi: 10.1007/s00418-023-02216-2. Epub 2023 Aug 3. Histochem Cell Biol. 2023. PMID: 37537341 Free PMC article.
Ten recommendations for organising bioimaging data for archival.
Korir PK, Iudin A, Somasundharam S, Weyand S, Salih O, Hartley M, Sarkans U, Patwardhan A, Kleywegt GJ. Korir PK, et al. Among authors: sarkans u. F1000Res. 2024 Feb 27;12:ELIXIR-1391. doi: 10.12688/f1000research.129720.2. eCollection 2023. F1000Res. 2024. PMID: 38486614 Free PMC article.
Data storage and analysis in ArrayExpress and Expression Profiler.
Rustici G, Kapushesky M, Kolesnikov N, Parkinson H, Sarkans U, Brazma A. Rustici G, et al. Among authors: sarkans u. Curr Protoc Bioinformatics. 2008 Sep;Chapter 7:7.13.1-7.13.27. doi: 10.1002/0471250953.bi0713s23. Curr Protoc Bioinformatics. 2008. PMID: 18819076
55 results