Saraiva JP - Search Results

1

Mining Synergistic Microbial Interactions: A Roadmap on How to Integrate Multi-Omics Data.

Saraiva JP, Worrich A, Karakoç C, Kallies R, Chatzinotas A, Centler F, Nunes da Rocha U. Saraiva JP, et al. Microorganisms. 2021 Apr 14;9(4):840. doi: 10.3390/microorganisms9040840. Microorganisms. 2021. PMID: 33920040 Free PMC article. Review.

2

Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition.

Tláskal V, Brabcová V, Větrovský T, Jomura M, López-Mondéjar R, Oliveira Monteiro LM, Saraiva JP, Human ZR, Cajthaml T, Nunes da Rocha U, Baldrian P. Tláskal V, et al. Among authors: saraiva jp. mSystems. 2021 Jan 12;6(1):e01078-20. doi: 10.1128/mSystems.01078-20. mSystems. 2021. PMID: 33436515 Free PMC article.

3

Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals.

Keller-Costa T, Lago-Lestón A, Saraiva JP, Toscan R, Silva SG, Gonçalves J, Cox CJ, Kyrpides N, Nunes da Rocha U, Costa R. Keller-Costa T, et al. Among authors: saraiva jp. Microbiome. 2021 Mar 25;9(1):72. doi: 10.1186/s40168-021-01031-y. Microbiome. 2021. PMID: 33766108 Free PMC article.

4

OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes.

Saraiva JP, Bartholomäus A, Kallies R, Gomes M, Bicalho M, Coelho Kasmanas J, Vogt C, Chatzinotas A, Stadler P, Dias O, Nunes da Rocha U. Saraiva JP, et al. Life Sci Alliance. 2021 Sep 27;4(12):e202101167. doi: 10.26508/lsa.202101167. Print 2021 Dec. Life Sci Alliance. 2021. PMID: 34580179 Free PMC article.

5

PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning.

Oliveira Monteiro LM, Saraiva JP, Brizola Toscan R, Stadler PF, Silva-Rocha R, Nunes da Rocha U. Oliveira Monteiro LM, et al. Among authors: saraiva jp. Environ Microbiome. 2022 Feb 8;17(1):7. doi: 10.1186/s40793-021-00394-x. Environ Microbiome. 2022. PMID: 35135629 Free PMC article.

6

Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture.

Liu B, Sträuber H, Saraiva J, Harms H, Silva SG, Kasmanas JC, Kleinsteuber S, Nunes da Rocha U. Liu B, et al. Microbiome. 2022 Mar 25;10(1):48. doi: 10.1186/s40168-021-01219-2. Microbiome. 2022. PMID: 35331330 Free PMC article.

7

MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.

Nata'ala MK, Avila Santos AP, Coelho Kasmanas J, Bartholomäus A, Saraiva JP, Godinho Silva S, Keller-Costa T, Costa R, Gomes NCM, Ponce de Leon Ferreira de Carvalho AC, Stadler PF, Sipoli Sanches D, Nunes da Rocha U. Nata'ala MK, et al. Among authors: saraiva jp. Environ Microbiome. 2022 Nov 18;17(1):57. doi: 10.1186/s40793-022-00449-7. Environ Microbiome. 2022. PMID: 36401317 Free PMC article.

8

Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge.

Abdulkadir N, Saraiva JP, Schattenberg F, Toscan RB, Borim Correa F, Harms H, Müller S, da Rocha UN. Abdulkadir N, et al. Among authors: saraiva jp. Microorganisms. 2023 Jan 10;11(1):175. doi: 10.3390/microorganisms11010175. Microorganisms. 2023. PMID: 36677467 Free PMC article.

9

Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa.

Magnúsdóttir S, Saraiva JP, Bartholomäus A, Soheili M, Toscan RB, Zhang J, Nunes da Rocha U; CLUE-TERRA consortium. Magnúsdóttir S, et al. Among authors: saraiva jp. Front Microbiol. 2023 Jan 25;14:1037845. doi: 10.3389/fmicb.2023.1037845. eCollection 2023. Front Microbiol. 2023. PMID: 36760505 Free PMC article.

10

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.

Rocha U, Coelho Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Štefanič P, Bicalho MF, Borim Correa F, Baştürk MN, Fousekis E, Viana Barbosa LM, Plewka J, Probst AJ, Baldrian P, Stadler PF; CLUE-TERRA Consortium. Rocha U, et al. Among authors: saraiva jp. Mol Ecol Resour. 2024 Feb;24(2):e13904. doi: 10.1111/1755-0998.13904. Epub 2023 Nov 23. Mol Ecol Resour. 2024. PMID: 37994269

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