Sankar K - Search Results

1

Altered dynamics upon oligomerization corresponds to key functional sites.

Mishra SK, Sankar K, Jernigan RL. Mishra SK, et al. Among authors: sankar k. Proteins. 2017 Aug;85(8):1422-1434. doi: 10.1002/prot.25302. Epub 2017 Apr 27. Proteins. 2017. PMID: 28383162 Free PMC article.

2

Comparisons of Protein Dynamics from Experimental Structure Ensembles, Molecular Dynamics Ensembles, and Coarse-Grained Elastic Network Models.

Sankar K, Mishra SK, Jernigan RL. Sankar K, et al. J Phys Chem B. 2018 May 31;122(21):5409-5417. doi: 10.1021/acs.jpcb.7b11668. Epub 2018 Feb 9. J Phys Chem B. 2018. PMID: 29376347

3

Distributions of experimental protein structures on coarse-grained free energy landscapes.

Sankar K, Liu J, Wang Y, Jernigan RL. Sankar K, et al. J Chem Phys. 2015 Dec 28;143(24):243153. doi: 10.1063/1.4937940. J Chem Phys. 2015. PMID: 26723638 Free PMC article.

4

Molecular determinants of cadherin ideal bond formation: Conformation-dependent unbinding on a multidimensional landscape.

Manibog K, Sankar K, Kim SA, Zhang Y, Jernigan RL, Sivasankar S. Manibog K, et al. Among authors: sankar k. Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):E5711-20. doi: 10.1073/pnas.1604012113. Epub 2016 Sep 12. Proc Natl Acad Sci U S A. 2016. PMID: 27621473 Free PMC article.

5

Knowledge-based entropies improve the identification of native protein structures.

Sankar K, Jia K, Jernigan RL. Sankar K, et al. Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2928-2933. doi: 10.1073/pnas.1613331114. Epub 2017 Mar 6. Proc Natl Acad Sci U S A. 2017. PMID: 28265078 Free PMC article.

6

Directional Force Originating from ATP Hydrolysis Drives the GroEL Conformational Change.

Liu J, Sankar K, Wang Y, Jia K, Jernigan RL. Liu J, et al. Among authors: sankar k. Biophys J. 2017 Apr 25;112(8):1561-1570. doi: 10.1016/j.bpj.2017.03.004. Biophys J. 2017. PMID: 28445748 Free PMC article.

7

Structure and function of LCI1: a plasma membrane CO₂ channel in the Chlamydomonas CO₂ concentrating mechanism.

Kono A, Chou TH, Radhakrishnan A, Bolla JR, Sankar K, Shome S, Su CC, Jernigan RL, Robinson CV, Yu EW, Spalding MH. Kono A, et al. Among authors: sankar k. Plant J. 2020 Jun;102(6):1107-1126. doi: 10.1111/tpj.14745. Epub 2020 Apr 18. Plant J. 2020. PMID: 32168387 Free PMC article.

8

Computational Ways to Enhance Protein Inhibitor Design.

Jernigan RL, Sankar K, Jia K, Faraggi E, Kloczkowski A. Jernigan RL, et al. Among authors: sankar k. Front Mol Biosci. 2021 Feb 3;7:607323. doi: 10.3389/fmolb.2020.607323. eCollection 2020. Front Mol Biosci. 2021. PMID: 33614705 Free PMC article.

9

Simulated Drug Efflux for the AbgT Family of Membrane Transporters.

Shome S, Sankar K, Jernigan RL. Shome S, et al. Among authors: sankar k. J Chem Inf Model. 2021 Nov 22;61(11):5673-5681. doi: 10.1021/acs.jcim.1c00516. Epub 2021 Oct 29. J Chem Inf Model. 2021. PMID: 34714659

10

The use of experimental structures to model protein dynamics.

Katebi AR, Sankar K, Jia K, Jernigan RL. Katebi AR, et al. Among authors: sankar k. Methods Mol Biol. 2015;1215:213-36. doi: 10.1007/978-1-4939-1465-4_10. Methods Mol Biol. 2015. PMID: 25330965 Free PMC article.

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