Sandegren L - Search Results

1

Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach.

Dvirnas A, Pichler C, Stewart CL, Quaderi S, Nyberg LK, Müller V, Kumar Bikkarolla S, Kristiansson E, Sandegren L, Westerlund F, Ambjörnsson T. Dvirnas A, et al. Among authors: sandegren l. PLoS One. 2018 Mar 9;13(3):e0193900. doi: 10.1371/journal.pone.0193900. eCollection 2018. PLoS One. 2018. PMID: 29522539 Free PMC article.

2

Fast size-determination of intact bacterial plasmids using nanofluidic channels.

Frykholm K, Nyberg LK, Lagerstedt E, Noble C, Fritzsche J, Karami N, Ambjörnsson T, Sandegren L, Westerlund F. Frykholm K, et al. Among authors: sandegren l. Lab Chip. 2015 Jul 7;15(13):2739-43. doi: 10.1039/c5lc00378d. Epub 2015 May 21. Lab Chip. 2015. PMID: 25997119

3

Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules.

Nyberg LK, Quaderi S, Emilsson G, Karami N, Lagerstedt E, Müller V, Noble C, Hammarberg S, Nilsson AN, Sjöberg F, Fritzsche J, Kristiansson E, Sandegren L, Ambjörnsson T, Westerlund F. Nyberg LK, et al. Among authors: sandegren l. Sci Rep. 2016 Jul 27;6:30410. doi: 10.1038/srep30410. Sci Rep. 2016. PMID: 27460437 Free PMC article.

4

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.

Müller V, Rajer F, Frykholm K, Nyberg LK, Quaderi S, Fritzsche J, Kristiansson E, Ambjörnsson T, Sandegren L, Westerlund F. Müller V, et al. Among authors: sandegren l. Sci Rep. 2016 Dec 1;6:37938. doi: 10.1038/srep37938. Sci Rep. 2016. PMID: 27905467 Free PMC article.

5

Corrigendum: Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules.

Nyberg LK, Quaderi S, Emilsson G, Karami N, Lagerstedt E, Müller V, Noble C, Hammarberg S, Nilsson AN, Sjöberg F, Fritzsche J, Kristiansson E, Sandegren L, Ambjörnsson T, Westerlund F. Nyberg LK, et al. Among authors: sandegren l. Sci Rep. 2017 Dec 22;7:46911. doi: 10.1038/srep46911. Sci Rep. 2017. PMID: 29269851 Free PMC article.

6

Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak.

Bikkarolla SK, Nordberg V, Rajer F, Müller V, Kabir MH, Kk S, Dvirnas A, Ambjörnsson T, Giske CG, Navér L, Sandegren L, Westerlund F. Bikkarolla SK, et al. Among authors: sandegren l. mBio. 2019 Jul 9;10(4):e00347-19. doi: 10.1128/mBio.00347-19. mBio. 2019. PMID: 31289171 Free PMC article.

7

Cultivation-Free Typing of Bacteria Using Optical DNA Mapping.

Müller V, Nyblom M, Johnning A, Wrande M, Dvirnas A, Kk S, Giske CG, Ambjörnsson T, Sandegren L, Kristiansson E, Westerlund F. Müller V, et al. Among authors: sandegren l. ACS Infect Dis. 2020 May 8;6(5):1076-1084. doi: 10.1021/acsinfecdis.9b00464. Epub 2020 Apr 28. ACS Infect Dis. 2020. PMID: 32294378 Free PMC article.

8

A Parallelized Nanofluidic Device for High-Throughput Optical DNA Mapping of Bacterial Plasmids.

Kk S, Lin YL, Sewunet T, Wrande M, Sandegren L, Giske CG, Westerlund F. Kk S, et al. Among authors: sandegren l. Micromachines (Basel). 2021 Oct 11;12(10):1234. doi: 10.3390/mi12101234. Micromachines (Basel). 2021. PMID: 34683285 Free PMC article.

9

Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach.

Dvirnas A, Stewart C, Müller V, Bikkarolla SK, Frykholm K, Sandegren L, Kristiansson E, Westerlund F, Ambjörnsson T. Dvirnas A, et al. Among authors: sandegren l. PLoS One. 2021 Nov 5;16(11):e0259670. doi: 10.1371/journal.pone.0259670. eCollection 2021. PLoS One. 2021. PMID: 34739528 Free PMC article.

10

A simple cut and stretch assay to detect antimicrobial resistance genes on bacterial plasmids by single-molecule fluorescence microscopy.

Goyal G, Ekedahl E, Nyblom M, Krog J, Fröbrant E, Brander M, Sewunet T, Tangkoskul T, Giske CG, Sandegren L, Thamlikitkul V, Ambjörnsson T, Westerlund F. Goyal G, et al. Among authors: sandegren l. Sci Rep. 2022 Jun 3;12(1):9301. doi: 10.1038/s41598-022-13315-w. Sci Rep. 2022. PMID: 35660772 Free PMC article.

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