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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, J… See abstract for full author list ➔ Shi L, et al. Among authors: samuelson fw. Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30. Nat Biotechnol. 2010. PMID: 20676074 Free PMC article.
Effect of training-sample size and classification difficulty on the accuracy of genomic predictors.
Popovici V, Chen W, Gallas BG, Hatzis C, Shi W, Samuelson FW, Nikolsky Y, Tsyganova M, Ishkin A, Nikolskaya T, Hess KR, Valero V, Booser D, Delorenzi M, Hortobagyi GN, Shi L, Symmans WF, Pusztai L. Popovici V, et al. Among authors: samuelson fw. Breast Cancer Res. 2010;12(1):R5. doi: 10.1186/bcr2468. Epub 2010 Jan 11. Breast Cancer Res. 2010. PMID: 20064235 Free PMC article.
The importance of ROC data.
Samuelson F, Gallas BD, Myers KJ, Petrick N, Pinsky P, Sahiner B, Campbell G, Pennello GA. Samuelson F, et al. Acad Radiol. 2011 Feb;18(2):257-8; author reply 259-61. doi: 10.1016/j.acra.2010.10.016. Acad Radiol. 2011. PMID: 21232688 No abstract available.
On the assessment of the added value of new predictive biomarkers.
Chen W, Samuelson FW, Gallas BD, Kang L, Sahiner B, Petrick N. Chen W, et al. Among authors: samuelson fw. BMC Med Res Methodol. 2013 Jul 29;13:98. doi: 10.1186/1471-2288-13-98. BMC Med Res Methodol. 2013. PMID: 23895587 Free PMC article.
Impact of prevalence and case distribution in lab-based diagnostic imaging studies.
Gallas BD, Chen W, Cole E, Ochs R, Petrick N, Pisano ED, Sahiner B, Samuelson FW, Myers KJ. Gallas BD, et al. Among authors: samuelson fw. J Med Imaging (Bellingham). 2019 Jan;6(1):015501. doi: 10.1117/1.JMI.6.1.015501. Epub 2019 Jan 21. J Med Imaging (Bellingham). 2019. PMID: 30713851 Free PMC article.
28 results