Samsonov SA - Search Results

1

Molecular dynamics insights into protein-glycosaminoglycan systems from microsecond-scale simulations.

Bojarski KK, Sieradzan AK, Samsonov SA. Bojarski KK, et al. Among authors: samsonov sa. Biopolymers. 2019 Jul;110(7):e23252. doi: 10.1002/bip.23252. Epub 2019 Jan 22. Biopolymers. 2019. PMID: 30667535

2

The effect of interleukin-8 truncations on its interactions with glycosaminoglycans.

Nordsieck K, Baumann L, Hintze V, Pisabarro MT, Schnabelrauch M, Beck-Sickinger AG, Samsonov SA. Nordsieck K, et al. Among authors: samsonov sa. Biopolymers. 2018 Aug;109(10):e23103. doi: 10.1002/bip.23103. Epub 2018 Jan 27. Biopolymers. 2018. PMID: 29377072

3

Computational Analysis of Solvent Inclusion in Docking Studies of Protein-Glycosaminoglycan Systems.

Samsonov SA. Samsonov SA. Methods Mol Biol. 2018;1762:445-454. doi: 10.1007/978-1-4939-7756-7_22. Methods Mol Biol. 2018. PMID: 29594785

4

Molecular dynamics-based model of VEGF-A and its heparin interactions.

Uciechowska-Kaczmarzyk U, Babik S, Zsila F, Bojarski KK, Beke-Somfai T, Samsonov SA. Uciechowska-Kaczmarzyk U, et al. Among authors: samsonov sa. J Mol Graph Model. 2018 Jun;82:157-166. doi: 10.1016/j.jmgm.2018.04.015. Epub 2018 Apr 27. J Mol Graph Model. 2018. PMID: 29738889

5

Insights into the structure and dynamics of lysyl oxidase propeptide, a flexible protein with numerous partners.

Vallet SD, Miele AE, Uciechowska-Kaczmarzyk U, Liwo A, Duclos B, Samsonov SA, Ricard-Blum S. Vallet SD, et al. Among authors: samsonov sa. Sci Rep. 2018 Aug 6;8(1):11768. doi: 10.1038/s41598-018-30190-6. Sci Rep. 2018. PMID: 30082873 Free PMC article.

6

Modeling large protein-glycosaminoglycan complexes using a fragment-based approach.

Samsonov SA, Zacharias M, Chauvot de Beauchene I. Samsonov SA, et al. J Comput Chem. 2019 May 30;40(14):1429-1439. doi: 10.1002/jcc.25797. Epub 2019 Feb 15. J Comput Chem. 2019. PMID: 30768805

7

Local and long range potentials for heparin-protein systems for coarse-grained simulations.

Samsonov SA, Lubecka EA, Bojarski KK, Ganzynkowicz R, Liwo A. Samsonov SA, et al. Biopolymers. 2019 Aug;110(8):e23269. doi: 10.1002/bip.23269. Epub 2019 Mar 13. Biopolymers. 2019. PMID: 30866039

8

Docking software performance in protein-glycosaminoglycan systems.

Uciechowska-Kaczmarzyk U, Chauvot de Beauchene I, Samsonov SA. Uciechowska-Kaczmarzyk U, et al. Among authors: samsonov sa. J Mol Graph Model. 2019 Jul;90:42-50. doi: 10.1016/j.jmgm.2019.04.001. Epub 2019 Apr 2. J Mol Graph Model. 2019. PMID: 30959268

9

The molecular mechanism of structural changes in the antimicrobial peptide CM15 upon complex formation with drug molecule suramin: a computational analysis.

Kohut G, Sieradzan A, Zsila F, Juhász T, Bősze S, Liwo A, Samsonov SA, Beke-Somfai T. Kohut G, et al. Among authors: samsonov sa. Phys Chem Chem Phys. 2019 May 28;21(20):10644-10659. doi: 10.1039/c9cp00471h. Epub 2019 May 13. Phys Chem Chem Phys. 2019. PMID: 31080973

10

NMR and molecular modeling reveal specificity of the interactions between CXCL14 and glycosaminoglycans.

Penk A, Baumann L, Huster D, Samsonov SA. Penk A, et al. Among authors: samsonov sa. Glycobiology. 2019 Sep 20;29(10):715-725. doi: 10.1093/glycob/cwz047. Glycobiology. 2019. PMID: 31264681

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