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CAR+ and CAR- T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies.
Louie RHY, Cai C, Samir J, Singh M, Deveson IW, Ferguson JM, Amos TG, McGuire HM, Gowrishankar K, Adikari T, Balderas R, Bonomi M, Ruella M, Bishop D, Gottlieb D, Blyth E, Micklethwaite K, Luciani F. Louie RHY, et al. Among authors: samir j. Nat Commun. 2023 Nov 27;14(1):7767. doi: 10.1038/s41467-023-43656-7. Nat Commun. 2023. PMID: 38012187 Free PMC article.
Identification of human progenitors of exhausted CD8+ T cells associated with elevated IFN-γ response in early phase of viral infection.
Cai C, Samir J, Pirozyan MR, Adikari TN, Gupta M, Leung P, Hughes B, Van der Byl W, Rizzetto S, Elthala A, Keoshkerian E, Palgen JL, Peters T, Nguyen THO, Louie R, Kedzierska K, Gaudieri S, Bull RA, Lloyd AR, Luciani F. Cai C, et al. Among authors: samir j. Nat Commun. 2022 Dec 7;13(1):7543. doi: 10.1038/s41467-022-35281-7. Nat Commun. 2022. PMID: 36477661 Free PMC article.
Single-Cell Transcriptome Analysis of T Cells.
Van Der Byl W, Rizzetto S, Samir J, Cai C, Eltahla AA, Luciani F. Van Der Byl W, et al. Among authors: samir j. Methods Mol Biol. 2019;2048:155-205. doi: 10.1007/978-1-4939-9728-2_16. Methods Mol Biol. 2019. PMID: 31396939
B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.
Rizzetto S, Koppstein DNP, Samir J, Singh M, Reed JH, Cai CH, Lloyd AR, Eltahla AA, Goodnow CC, Luciani F. Rizzetto S, et al. Among authors: samir j. Bioinformatics. 2018 Aug 15;34(16):2846-2847. doi: 10.1093/bioinformatics/bty203. Bioinformatics. 2018. PMID: 29659703
VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2.
Goncharov M, Bagaev D, Shcherbinin D, Zvyagin I, Bolotin D, Thomas PG, Minervina AA, Pogorelyy MV, Ladell K, McLaren JE, Price DA, Nguyen THO, Rowntree LC, Clemens EB, Kedzierska K, Dolton G, Rius CR, Sewell A, Samir J, Luciani F, Zornikova KV, Khmelevskaya AA, Sheetikov SA, Efimov GA, Chudakov D, Shugay M. Goncharov M, et al. Among authors: samir j. Nat Methods. 2022 Sep;19(9):1017-1019. doi: 10.1038/s41592-022-01578-0. Nat Methods. 2022. PMID: 35970936 No abstract available.
Newborn and child-like molecular signatures in older adults stem from TCR shifts across human lifespan.
van de Sandt CE, Nguyen THO, Gherardin NA, Crawford JC, Samir J, Minervina AA, Pogorelyy MV, Rizzetto S, Szeto C, Kaur J, Ranson N, Sonda S, Harper A, Redmond SJ, McQuilten HA, Menon T, Sant S, Jia X, Pedrina K, Karapanagiotidis T, Cain N, Nicholson S, Chen Z, Lim R, Clemens EB, Eltahla A, La Gruta NL, Crowe J, Lappas M, Rossjohn J, Godfrey DI, Thomas PG, Gras S, Flanagan KL, Luciani F, Kedzierska K. van de Sandt CE, et al. Among authors: samir j. Nat Immunol. 2023 Nov;24(11):1890-1907. doi: 10.1038/s41590-023-01633-8. Epub 2023 Sep 25. Nat Immunol. 2023. PMID: 37749325 Free PMC article.
Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach.
Ghita L, Yao Z, Xie Y, Duran V, Cagirici HB, Samir J, Osman I, Rebellón-Sánchez DE, Agudelo-Rojas OL, Sanz AM, Sahoo MK, Robinson ML, Gelvez-Ramirez RM, Bueno N, Luciani F, Pinsky BA, Montoya JG, Estupiñan-Cardenas MI, Villar-Centeno LA, Rojas-Garrido EM, Rosso F, Quake SR, Zanini F, Einav S. Ghita L, et al. Among authors: samir j. Nat Immunol. 2023 Dec;24(12):2150-2163. doi: 10.1038/s41590-023-01654-3. Epub 2023 Oct 23. Nat Immunol. 2023. PMID: 37872316
Natural killer cell receptors regulate responses of HLA-E-restricted T cells.
Sullivan LC, Nguyen THO, Harpur CM, Stankovic S, Kanagarajah AR, Koutsakos M, Saunders PM, Cai Z, Gray JA, Widjaja JML, Lin J, Pietra G, Mingari MC, Moretta L, Samir J, Luciani F, Westall GP, Malmberg KJ, Kedzierska K, Brooks AG. Sullivan LC, et al. Among authors: samir j. Sci Immunol. 2021 Apr 23;6(58):eabe9057. doi: 10.1126/sciimmunol.abe9057. Sci Immunol. 2021. PMID: 33893172
16 results