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Major data analysis errors invalidate cancer microbiome findings.
Gihawi A, Ge Y, Lu J, Puiu D, Xu A, Cooper CS, Brewer DS, Pertea M, Salzberg SL. Gihawi A, et al. Among authors: salzberg sl. bioRxiv [Preprint]. 2023 Jul 31:2023.07.28.550993. doi: 10.1101/2023.07.28.550993. bioRxiv. 2023. PMID: 37577699 Free PMC article. Updated. Preprint.
The status of the human gene catalogue.
Amaral P, Carbonell-Sala S, De La Vega FM, Faial T, Frankish A, Gingeras T, Guigo R, Harrow JL, Hatzigeorgiou AG, Johnson R, Murphy TD, Pertea M, Pruitt KD, Pujar S, Takahashi H, Ulitsky I, Varabyou A, Wells CA, Yandell M, Carninci P, Salzberg SL. Amaral P, et al. Among authors: salzberg sl. ArXiv [Preprint]. 2023 Mar 24:arXiv:2303.13996v1. ArXiv. 2023. PMID: 36994150 Free PMC article. Updated. Preprint.
Detecting differential transcript usage in complex diseases with SPIT.
Erdogdu B, Varabyou A, Hicks SC, Salzberg SL, Pertea M. Erdogdu B, et al. Among authors: salzberg sl. Cell Rep Methods. 2024 Mar 25;4(3):100736. doi: 10.1016/j.crmeth.2024.100736. Epub 2024 Mar 19. Cell Rep Methods. 2024. PMID: 38508189 Free PMC article.
Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries.
Zekavat SM, Ruotsalainen S, Handsaker RE, Alver M, Bloom J, Poterba T, Seed C, Ernst J, Chaffin M, Engreitz J, Peloso GM, Manichaikul A, Yang C, Ryan KA, Fu M, Johnson WC, Tsai M, Budoff M, Vasan RS, Cupples LA, Rotter JI, Rich SS, Post W, Mitchell BD, Correa A, Metspalu A, Wilson JG, Salomaa V, Kellis M, Daly MJ, Neale BM, McCarroll S, Surakka I, Esko T, Ganna A, Ripatti S, Kathiresan S, Natarajan P; NHLBI TOPMed Lipids Working Group. Zekavat SM, et al. Nat Commun. 2018 Aug 23;9(1):3493. doi: 10.1038/s41467-018-05975-y. Nat Commun. 2018. PMID: 30140049 Free PMC article.
Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries.
Zekavat SM, Ruotsalainen S, Handsaker RE, Alver M, Bloom J, Poterba T, Seed C, Ernst J, Chaffin M, Engreitz J, Peloso GM, Manichaikul A, Yang C, Ryan KA, Fu M, Johnson WC, Tsai M, Budoff M, Vasan RS, Cupples LA, Rotter JI, Rich SS, Post W, Mitchell BD, Correa A, Metspalu A, Wilson JG, Salomaa V, Kellis M, Daly MJ, Neale BM, McCarroll S, Surakka I, Esko T, Ganna A, Ripatti S, Kathiresan S, Natarajan P; NHLBI TOPMed Lipids Working Group. Zekavat SM, et al. Nat Commun. 2018 Jul 4;9(1):2606. doi: 10.1038/s41467-018-04668-w. Nat Commun. 2018. PMID: 29973585 Free PMC article.
A genome sequence for the threatened whitebark pine.
Neale DB, Zimin AV, Meltzer A, Bhattarai A, Amee M, Figueroa Corona L, Allen BJ, Puiu D, Wright J, De La Torre AR, McGuire PE, Timp W, Salzberg SL, Wegrzyn JL. Neale DB, et al. Among authors: salzberg sl. G3 (Bethesda). 2024 May 7;14(5):jkae061. doi: 10.1093/g3journal/jkae061. G3 (Bethesda). 2024. PMID: 38526344 Free PMC article.
Implementing governmental oversight of enhanced potential pandemic pathogen research.
Ebright RH, MacIntyre R, Dudley JP, Butler CD, Goffinet A, Hammond E, Harris ED, Kakeya H, Lambrinidou Y, Leitenberg M, Newman SA, Nickels BE, Rahalkar MC, Ridley MW, Salzberg SL, Seshadri H, Theißen G, VanDongen AM, Washburne A. Ebright RH, et al. Among authors: salzberg sl. J Virol. 2024 Apr 16;98(4):e0023724. doi: 10.1128/jvi.00237-24. Epub 2024 Mar 13. J Virol. 2024. PMID: 38477586 Free PMC article. No abstract available.
Novel metagenomics analysis of stony coral tissue loss disease.
Heinz JM, Lu J, Huebner LK, Salzberg SL, Sommer M, Rosales SM. Heinz JM, et al. Among authors: salzberg sl. bioRxiv [Preprint]. 2024 Apr 2:2024.01.02.573916. doi: 10.1101/2024.01.02.573916. bioRxiv. 2024. PMID: 38260425 Free PMC article. Preprint.
286 results