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Removing contaminants from databases of draft genomes.
Lu J, Salzberg SL. Lu J, et al. Among authors: salzberg sl. PLoS Comput Biol. 2018 Jun 25;14(6):e1006277. doi: 10.1371/journal.pcbi.1006277. eCollection 2018 Jun. PLoS Comput Biol. 2018. PMID: 29939994 Free PMC article.
Assembly of large genomes using second-generation sequencing.
Schatz MC, Delcher AL, Salzberg SL. Schatz MC, et al. Among authors: salzberg sl. Genome Res. 2010 Sep;20(9):1165-73. doi: 10.1101/gr.101360.109. Epub 2010 May 27. Genome Res. 2010. PMID: 20508146 Free PMC article.
GAGE: A critical evaluation of genome assemblies and assembly algorithms.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. Salzberg SL, et al. Genome Res. 2012 Mar;22(3):557-67. doi: 10.1101/gr.131383.111. Epub 2012 Jan 6. Genome Res. 2012. PMID: 22147368 Free PMC article.
GAGE-B: an evaluation of genome assemblers for bacterial organisms.
Magoc T, Pabinger S, Canzar S, Liu X, Su Q, Puiu D, Tallon LJ, Salzberg SL. Magoc T, et al. Among authors: salzberg sl. Bioinformatics. 2013 Jul 15;29(14):1718-25. doi: 10.1093/bioinformatics/btt273. Epub 2013 May 10. Bioinformatics. 2013. PMID: 23665771 Free PMC article.
MUMmer4: A fast and versatile genome alignment system.
Marçais G, Delcher AL, Phillippy AM, Coston R, Salzberg SL, Zimin A. Marçais G, et al. Among authors: salzberg sl. PLoS Comput Biol. 2018 Jan 26;14(1):e1005944. doi: 10.1371/journal.pcbi.1005944. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29373581 Free PMC article.
389 results