Saltykova A - Search Results

1

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies.

Buytaers FE, Saltykova A, Denayer S, Verhaegen B, Vanneste K, Roosens NHC, Piérard D, Marchal K, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: saltykova a. Front Microbiol. 2021 Nov 5;12:738284. doi: 10.3389/fmicb.2021.738284. eCollection 2021. Front Microbiol. 2021. PMID: 34803953 Free PMC article.

2

Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept.

Saltykova A, Mattheus W, Bertrand S, Roosens NHC, Marchal K, De Keersmaecker SCJ. Saltykova A, et al. Front Microbiol. 2019 Dec 18;10:2897. doi: 10.3389/fmicb.2019.02897. eCollection 2019. Front Microbiol. 2019. PMID: 31921072 Free PMC article.

3

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.

Buytaers FE, Saltykova A, Denayer S, Verhaegen B, Vanneste K, Roosens NHC, Piérard D, Marchal K, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: saltykova a. Microorganisms. 2020 Aug 5;8(8):1191. doi: 10.3390/microorganisms8081191. Microorganisms. 2020. PMID: 32764329 Free PMC article.

4

Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.

Saltykova A, Buytaers FE, Denayer S, Verhaegen B, Piérard D, Roosens NHC, Marchal K, De Keersmaecker SCJ. Saltykova A, et al. Int J Mol Sci. 2020 Aug 8;21(16):5688. doi: 10.3390/ijms21165688. Int J Mol Sci. 2020. PMID: 32784459 Free PMC article.

5

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak.

Buytaers FE, Saltykova A, Mattheus W, Verhaegen B, Roosens NHC, Vanneste K, Laisnez V, Hammami N, Pochet B, Cantaert V, Marchal K, Denayer S, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: saltykova a. Microb Genom. 2021 Apr;7(4):000547. doi: 10.1099/mgen.0.000547. Microb Genom. 2021. PMID: 33826490 Free PMC article.

6

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:

Saltykova A, Wuyts V, Mattheus W, Bertrand S, Roosens NHC, Marchal K, De Keersmaecker SCJ. Saltykova A, et al. PLoS One. 2018 Feb 6;13(2):e0192504. doi: 10.1371/journal.pone.0192504. eCollection 2018. PLoS One. 2018. PMID: 29408896 Free PMC article.

7

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.

Fraiture MA, Saltykova A, Hoffman S, Winand R, Deforce D, Vanneste K, De Keersmaecker SCJ, Roosens NHC. Fraiture MA, et al. Among authors: saltykova a. Sci Rep. 2018 May 21;8(1):7903. doi: 10.1038/s41598-018-26259-x. Sci Rep. 2018. PMID: 29785005 Free PMC article.

8

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java.

Gand M, Mattheus W, Saltykova A, Roosens N, Dierick K, Marchal K, De Keersmaecker SCJ, Bertrand S. Gand M, et al. Among authors: saltykova a. Appl Microbiol Biotechnol. 2019 Jun;103(12):4987-4996. doi: 10.1007/s00253-019-09854-4. Epub 2019 May 6. Appl Microbiol Biotechnol. 2019. PMID: 31062054 Free PMC article.

9

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus.

Berbers B, Saltykova A, Garcia-Graells C, Philipp P, Arella F, Marchal K, Winand R, Vanneste K, Roosens NHC, De Keersmaecker SCJ. Berbers B, et al. Among authors: saltykova a. Sci Rep. 2020 Mar 9;10(1):4310. doi: 10.1038/s41598-020-61158-0. Sci Rep. 2020. PMID: 32152350 Free PMC article.

10

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database.

Saltykova A, Van Braekel J, Papazova N, Fraiture MA, Deforce D, Vanneste K, De Keersmaecker SCJ, Roosens NH. Saltykova A, et al. Food Chem (Oxf). 2022 Mar 7;4:100096. doi: 10.1016/j.fochms.2022.100096. eCollection 2022 Jul 30. Food Chem (Oxf). 2022. PMID: 35415691 Free PMC article.

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