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RUV-III-NB: normalization of single cell RNA-seq data.
Salim A, Molania R, Wang J, De Livera A, Thijssen R, Speed TP. Salim A, et al. Nucleic Acids Res. 2022 Sep 9;50(16):e96. doi: 10.1093/nar/gkac486. Nucleic Acids Res. 2022. PMID: 35758618 Free PMC article.
Powerful differential expression analysis incorporating network topology for next-generation sequencing data.
Dona MSI, Prendergast LA, Mathivanan S, Keerthikumar S, Salim A. Dona MSI, et al. Among authors: salim a. Bioinformatics. 2017 May 15;33(10):1505-1513. doi: 10.1093/bioinformatics/btw833. Bioinformatics. 2017. PMID: 28172447
Simulation studies demonstrate that our method outperforms the two-state MRF model for various sample sizes. Furthermore, for a comparable FDR, it has better sensitivity than DESeq, EBSeq, edgeR and NOISeq. ...After installation, type vignette("pathDESeq") to access the vi …
Simulation studies demonstrate that our method outperforms the two-state MRF model for various sample sizes. Furthermore, for a compa …
Concordant peripheral lipidome signatures in two large clinical studies of Alzheimer's disease.
Huynh K, Lim WLF, Giles C, Jayawardana KS, Salim A, Mellett NA, Smith AAT, Olshansky G, Drew BG, Chatterjee P, Martins I, Laws SM, Bush AI, Rowe CC, Villemagne VL, Ames D, Masters CL, Arnold M, Nho K, Saykin AJ, Baillie R, Han X, Kaddurah-Daouk R, Martins RN, Meikle PJ. Huynh K, et al. Among authors: salim a. Nat Commun. 2020 Nov 10;11(1):5698. doi: 10.1038/s41467-020-19473-7. Nat Commun. 2020. PMID: 33173055 Free PMC article.
1,186 results