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A roadmap for the functional annotation of protein families: a community perspective.
de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM, Xu J. de Crécy-Lagard V, et al. Among authors: saleh l. Database (Oxford). 2022 Aug 12;2022:baac062. doi: 10.1093/database/baac062. Database (Oxford). 2022. PMID: 35961013 Free PMC article.
Phage-encoded ten-eleven translocation dioxygenase (TET) is active in C5-cytosine hypermodification in DNA.
Burke EJ, Rodda SS, Lund SR, Sun Z, Zeroka MR, O'Toole KH, Parker MJ, Doshi DS, Guan C, Lee YJ, Dai N, Hough DM, Shnider DA, Corrêa IR Jr, Weigele PR, Saleh L. Burke EJ, et al. Among authors: saleh l. Proc Natl Acad Sci U S A. 2021 Jun 29;118(26):e2026742118. doi: 10.1073/pnas.2026742118. Proc Natl Acad Sci U S A. 2021. PMID: 34155108 Free PMC article.
Characterization of RimO, a new member of the methylthiotransferase subclass of the radical SAM superfamily.
Lee KH, Saleh L, Anton BP, Madinger CL, Benner JS, Iwig DF, Roberts RJ, Krebs C, Booker SJ. Lee KH, et al. Among authors: saleh l. Biochemistry. 2009 Oct 27;48(42):10162-74. doi: 10.1021/bi900939w. Biochemistry. 2009. PMID: 19736993 Free PMC article.
RimO, encoded by the yliG gene in Escherichia coli, has been recently identified in vivo as the enzyme responsible for the attachment of a methylthio group on the beta-carbon of Asp88 of the small ribosomal protein S12 [Anton, B. P., Saleh, L., Benner, J. S., Raleig …
RimO, encoded by the yliG gene in Escherichia coli, has been recently identified in vivo as the enzyme responsible for the attachment of a m …
Pathways of thymidine hypermodification.
Lee YJ, Dai N, Müller SI, Guan C, Parker MJ, Fraser ME, Walsh SE, Sridar J, Mulholland A, Nayak K, Sun Z, Lin YC, Comb DG, Marks K, Gonzalez R, Dowling DP, Bandarian V, Saleh L, Corrêa IR, Weigele PR. Lee YJ, et al. Among authors: saleh l. Nucleic Acids Res. 2022 Apr 8;50(6):3001-3017. doi: 10.1093/nar/gkab781. Nucleic Acids Res. 2022. PMID: 34522950 Free PMC article.
Biochemical characterization of a Naegleria TET-like oxygenase and its application in single molecule sequencing of 5-methylcytosine.
Pais JE, Dai N, Tamanaha E, Vaisvila R, Fomenkov AI, Bitinaite J, Sun Z, Guan S, Corrêa IR Jr, Noren CJ, Cheng X, Roberts RJ, Zheng Y, Saleh L. Pais JE, et al. Among authors: saleh l. Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4316-21. doi: 10.1073/pnas.1417939112. Epub 2015 Mar 23. Proc Natl Acad Sci U S A. 2015. PMID: 25831492 Free PMC article.
Protein splicing in cis and in trans.
Saleh L, Perler FB. Saleh L, et al. Chem Rec. 2006;6(4):183-93. doi: 10.1002/tcr.20082. Chem Rec. 2006. PMID: 16900466 Review.
297 results