Sahinalp SC - Search Results

1

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS. Yu NY, et al. Among authors: sahinalp sc. Bioinformatics. 2010 Jul 1;26(13):1608-15. doi: 10.1093/bioinformatics/btq249. Epub 2010 May 13. Bioinformatics. 2010. PMID: 20472543 Free PMC article.

2

Distance based algorithms for small biomolecule classification and structural similarity search.

Karakoc E, Cherkasov A, Sahinalp SC. Karakoc E, et al. Among authors: sahinalp sc. Bioinformatics. 2006 Jul 15;22(14):e243-51. doi: 10.1093/bioinformatics/btl259. Bioinformatics. 2006. PMID: 16873478

3

Biomolecular network motif counting and discovery by color coding.

Alon N, Dao P, Hajirasouliha I, Hormozdiari F, Sahinalp SC. Alon N, et al. Among authors: sahinalp sc. Bioinformatics. 2008 Jul 1;24(13):i241-9. doi: 10.1093/bioinformatics/btn163. Bioinformatics. 2008. PMID: 18586721 Free PMC article.

4

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.

Hajirasouliha I, Hormozdiari F, Sahinalp SC, Birol I. Hajirasouliha I, et al. Among authors: sahinalp sc. Bioinformatics. 2008 Jul 1;24(13):i32-40. doi: 10.1093/bioinformatics/btn173. Bioinformatics. 2008. PMID: 18586730 Free PMC article.

5

Dense graphlet statistics of protein interaction and random networks.

Colak R, Hormozdiari F, Moser F, Schönhuth A, Holman J, Ester M, Sahinalp SC. Colak R, et al. Among authors: sahinalp sc. Pac Symp Biocomput. 2009:178-89. doi: 10.1142/9789812836939_0018. Pac Symp Biocomput. 2009. PMID: 19213135 Free article.

6

A partition function algorithm for interacting nucleic acid strands.

Chitsaz H, Salari R, Sahinalp SC, Backofen R. Chitsaz H, et al. Among authors: sahinalp sc. Bioinformatics. 2009 Jun 15;25(12):i365-73. doi: 10.1093/bioinformatics/btp212. Bioinformatics. 2009. PMID: 19478011 Free PMC article.

7

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.

Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC. Hajirasouliha I, et al. Among authors: sahinalp sc. Bioinformatics. 2010 May 15;26(10):1277-83. doi: 10.1093/bioinformatics/btq152. Epub 2010 Apr 12. Bioinformatics. 2010. PMID: 20385726 Free PMC article.

8

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.

Hormozdiari F, Hajirasouliha I, Dao P, Hach F, Yorukoglu D, Alkan C, Eichler EE, Sahinalp SC. Hormozdiari F, et al. Among authors: sahinalp sc. Bioinformatics. 2010 Jun 15;26(12):i350-7. doi: 10.1093/bioinformatics/btq216. Bioinformatics. 2010. PMID: 20529927 Free PMC article.

9

Alu repeat discovery and characterization within human genomes.

Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE. Hormozdiari F, et al. Among authors: sahinalp sc. Genome Res. 2011 Jun;21(6):840-9. doi: 10.1101/gr.115956.110. Epub 2010 Dec 3. Genome Res. 2011. PMID: 21131385 Free PMC article.

10

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.

McPherson A, Wu C, Hajirasouliha I, Hormozdiari F, Hach F, Lapuk A, Volik S, Shah S, Collins C, Sahinalp SC. McPherson A, et al. Among authors: sahinalp sc. Bioinformatics. 2011 Jun 1;27(11):1481-8. doi: 10.1093/bioinformatics/btr184. Epub 2011 Apr 9. Bioinformatics. 2011. PMID: 21478487

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