Saez-Rodriguez J - Search Results

1

Transcription Factor Activity Inference in Systemic Lupus Erythematosus.

Lopez-Dominguez R, Toro-Dominguez D, Martorell-Marugan J, Garcia-Moreno A, Holland CH, Saez-Rodriguez J, Goldman D, Petri MA, Alarcon-Riquelme ME, Carmona-Saez P. Lopez-Dominguez R, et al. Life (Basel). 2021 Apr 1;11(4):299. doi: 10.3390/life11040299. Life (Basel). 2021. PMID: 33915751 Free PMC article.

2

Benchmark and integration of resources for the estimation of human transcription factor activities.

Garcia-Alonso L, Holland CH, Ibrahim MM, Turei D, Saez-Rodriguez J. Garcia-Alonso L, et al. Genome Res. 2019 Aug;29(8):1363-1375. doi: 10.1101/gr.240663.118. Epub 2019 Jul 24. Genome Res. 2019. PMID: 31340985 Free PMC article.

3

Transfer of regulatory knowledge from human to mouse for functional genomics analysis.

Holland CH, Szalai B, Saez-Rodriguez J. Holland CH, et al. Biochim Biophys Acta Gene Regul Mech. 2020 Jun;1863(6):194431. doi: 10.1016/j.bbagrm.2019.194431. Epub 2019 Sep 13. Biochim Biophys Acta Gene Regul Mech. 2020. PMID: 31525460

4

Signatures of cell death and proliferation in perturbation transcriptomics data-from confounding factor to effective prediction.

Szalai B, Subramanian V, Holland CH, Alföldi R, Puskás LG, Saez-Rodriguez J. Szalai B, et al. Nucleic Acids Res. 2019 Nov 4;47(19):10010-10026. doi: 10.1093/nar/gkz805. Nucleic Acids Res. 2019. PMID: 31552418 Free PMC article.

5

Influence of Liver Fibrosis on Lobular Zonation.

Ghallab A, Myllys M, Holland CH, Zaza A, Murad W, Hassan R, Ahmed YA, Abbas T, Abdelrahim EA, Schneider KM, Matz-Soja M, Reinders J, Gebhardt R, Berres ML, Hatting M, Drasdo D, Saez-Rodriguez J, Trautwein C, Hengstler JG. Ghallab A, et al. Cells. 2019 Dec 2;8(12):1556. doi: 10.3390/cells8121556. Cells. 2019. PMID: 31810365 Free PMC article.

6

A Functional Landscape of CKD Entities From Public Transcriptomic Data.

Tajti F, Kuppe C, Antoranz A, Ibrahim MM, Kim H, Ceccarelli F, Holland CH, Olauson H, Floege J, Alexopoulos LG, Kramann R, Saez-Rodriguez J. Tajti F, et al. Kidney Int Rep. 2019 Nov 13;5(2):211-224. doi: 10.1016/j.ekir.2019.11.005. eCollection 2020 Feb. Kidney Int Rep. 2019. PMID: 32043035 Free PMC article.

7

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data.

Holland CH, Tanevski J, Perales-Patón J, Gleixner J, Kumar MP, Mereu E, Joughin BA, Stegle O, Lauffenburger DA, Heyn H, Szalai B, Saez-Rodriguez J. Holland CH, et al. Genome Biol. 2020 Feb 12;21(1):36. doi: 10.1186/s13059-020-1949-z. Genome Biol. 2020. PMID: 32051003 Free PMC article.

8

Hepatocyte-specific NRF2 activation controls fibrogenesis and carcinogenesis in steatohepatitis.

Mohs A, Otto T, Schneider KM, Peltzer M, Boekschoten M, Holland CH, Hudert CA, Kalveram L, Wiegand S, Saez-Rodriguez J, Longerich T, Hengstler JG, Trautwein C. Mohs A, et al. J Hepatol. 2021 Mar;74(3):638-648. doi: 10.1016/j.jhep.2020.09.037. Epub 2020 Oct 24. J Hepatol. 2021. PMID: 33342543

9

Consensus Transcriptional Landscape of Human End-Stage Heart Failure.

Ramirez Flores RO, Lanzer JD, Holland CH, Leuschner F, Most P, Schultz JH, Levinson RT, Saez-Rodriguez J. Ramirez Flores RO, et al. J Am Heart Assoc. 2021 Apr 6;10(7):e019667. doi: 10.1161/JAHA.120.019667. Epub 2021 Mar 31. J Am Heart Assoc. 2021. PMID: 33787284 Free PMC article. Review.

10

Corrigendum: Benchmark and integration of resources for the estimation of human transcription factor activities.

Garcia-Alonso L, Holland CH, Ibrahim MM, Turei D, Saez-Rodriguez J. Garcia-Alonso L, et al. Genome Res. 2021 Apr;31(4):745. doi: 10.1101/gr.275408.121. Genome Res. 2021. PMID: 33795376 Free PMC article. No abstract available.

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