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Whole-brain serial-section electron microscopy in larval zebrafish.
Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WA, Jeong WK, Lichtman JW, Engert F. Hildebrand DGC, et al. Among authors: saalfeld s. Nature. 2017 May 18;545(7654):345-349. doi: 10.1038/nature22356. Epub 2017 May 10. Nature. 2017. PMID: 28489821 Free PMC article.
A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.
Zheng Z, Lauritzen JS, Perlman E, Robinson CG, Nichols M, Milkie D, Torrens O, Price J, Fisher CB, Sharifi N, Calle-Schuler SA, Kmecova L, Ali IJ, Karsh B, Trautman ET, Bogovic JA, Hanslovsky P, Jefferis GSXE, Kazhdan M, Khairy K, Saalfeld S, Fetter RD, Bock DD. Zheng Z, et al. Among authors: saalfeld s. Cell. 2018 Jul 26;174(3):730-743.e22. doi: 10.1016/j.cell.2018.06.019. Epub 2018 Jul 19. Cell. 2018. PMID: 30033368 Free PMC article.
Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set.
Buhmann J, Sheridan A, Malin-Mayor C, Schlegel P, Gerhard S, Kazimiers T, Krause R, Nguyen TM, Heinrich L, Lee WA, Wilson R, Saalfeld S, Jefferis GSXE, Bock DD, Turaga SC, Cook M, Funke J. Buhmann J, et al. Among authors: saalfeld s. Nat Methods. 2021 Jul;18(7):771-774. doi: 10.1038/s41592-021-01183-7. Epub 2021 Jun 24. Nat Methods. 2021. PMID: 34168373 Free PMC article.
Whole-cell organelle segmentation in volume electron microscopy.
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, Xu CS, Funke J, Korff W, Hess HF, Lippincott-Schwartz J, Saalfeld S, Weigel AV; COSEM Project Team. Heinrich L, et al. Among authors: saalfeld s. Nature. 2021 Nov;599(7883):141-146. doi: 10.1038/s41586-021-03977-3. Epub 2021 Oct 6. Nature. 2021. PMID: 34616042
A scalable and modular automated pipeline for stitching of large electron microscopy datasets.
Mahalingam G, Torres R, Kapner D, Trautman ET, Fliss T, Seshamani S, Perlman E, Young R, Kinn S, Buchanan J, Takeno MM, Yin W, Bumbarger DJ, Gwinn RP, Nyhus J, Lein E, Smith SJ, Reid RC, Khairy KA, Saalfeld S, Collman F, Macarico da Costa N. Mahalingam G, et al. Among authors: saalfeld s. Elife. 2022 Jul 26;11:e76534. doi: 10.7554/eLife.76534. Elife. 2022. PMID: 35880860 Free PMC article.
Local shape descriptors for neuron segmentation.
Sheridan A, Nguyen TM, Deb D, Lee WA, Saalfeld S, Turaga SC, Manor U, Funke J. Sheridan A, et al. Among authors: saalfeld s. Nat Methods. 2023 Feb;20(2):295-303. doi: 10.1038/s41592-022-01711-z. Epub 2022 Dec 30. Nat Methods. 2023. PMID: 36585455 Free PMC article.
110 results