Ryazantsev MN - Search Results

1

Bioimpedance Spectroscopy: Basics and Applications.

Stupin DD, Kuzina EA, Abelit AA, Emelyanov AK, Nikolaev DM, Ryazantsev MN, Koniakhin SV, Dubina MV. Stupin DD, et al. Among authors: ryazantsev mn. ACS Biomater Sci Eng. 2021 Jun 14;7(6):1962-1986. doi: 10.1021/acsbiomaterials.0c01570. Epub 2021 Mar 22. ACS Biomater Sci Eng. 2021. PMID: 33749256 Review.

2

A voltage-dependent fluorescent indicator for optogenetic applications, archaerhodopsin-3: Structure and optical properties from in silico modeling.

Nikolaev DM, Emelyanov A, Boitsov VM, Panov MS, Ryazantsev MN. Nikolaev DM, et al. Among authors: ryazantsev mn. F1000Res. 2017 Jan 11;6:33. doi: 10.12688/f1000research.10541.3. eCollection 2017. F1000Res. 2017. PMID: 28435665 Free PMC article.

3

New Experimental Models of Retinal Degeneration for Screening Molecular Photochromic Ion Channel Blockers.

Rotov AY, Astakhova LA, Sitnikova VS, Evdokimov AA, Boitsov VM, Dubina MV, Ryazantsev MN, Firsov ML. Rotov AY, et al. Among authors: ryazantsev mn. Acta Naturae. 2018 Jan-Mar;10(1):75-84. Acta Naturae. 2018. PMID: 29713521 Free PMC article.

4

A Comparative Study of Modern Homology Modeling Algorithms for Rhodopsin Structure Prediction.

Nikolaev DM, Shtyrov AA, Panov MS, Jamal A, Chakchir OB, Kochemirovsky VA, Olivucci M, Ryazantsev MN. Nikolaev DM, et al. Among authors: ryazantsev mn. ACS Omega. 2018 Jul 31;3(7):7555-7566. doi: 10.1021/acsomega.8b00721. Epub 2018 Jul 9. ACS Omega. 2018. PMID: 30087916 Free PMC article.

5

Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins.

Ryazantsev MN, Nikolaev DM, Struts AV, Brown MF. Ryazantsev MN, et al. J Membr Biol. 2019 Oct;252(4-5):425-449. doi: 10.1007/s00232-019-00095-0. Epub 2019 Sep 30. J Membr Biol. 2019. PMID: 31570961 Review.

6

An assessment of water placement algorithms in quantum mechanics/molecular mechanics modeling: the case of rhodopsins' first spectral absorption band maxima.

Nikolaev DM , Shtyrov AA , Mereshchenko AS , Panov MS , Tveryanovich YS , Ryazantsev MN . Nikolaev DM , et al. Among authors: ryazantsev mn. Phys Chem Chem Phys. 2020 Aug 28;22(32):18114-18123. doi: 10.1039/d0cp02638g. Epub 2020 Aug 6. Phys Chem Chem Phys. 2020. PMID: 32761024

7

In Situ Laser-Induced Fabrication of a Ruthenium-Based Microelectrode for Non-Enzymatic Dopamine Sensing.

Panov MS, Grishankina AE, Stupin DD, Lihachev AI, Mironov VN, Strashkov DM, Khairullina EM, Tumkin II, Ryazantsev MN. Panov MS, et al. Among authors: ryazantsev mn. Materials (Basel). 2020 Nov 27;13(23):5385. doi: 10.3390/ma13235385. Materials (Basel). 2020. PMID: 33260836 Free PMC article.

8

Simple Models to Study Spectral Properties of Microbial and Animal Rhodopsins: Evaluation of the Electrostatic Effect of Charged and Polar Residues on the First Absorption Band Maxima.

Shtyrov AA, Nikolaev DM, Mironov VN, Vasin AV, Panov MS, Tveryanovich YS, Ryazantsev MN. Shtyrov AA, et al. Among authors: ryazantsev mn. Int J Mol Sci. 2021 Mar 16;22(6):3029. doi: 10.3390/ijms22063029. Int J Mol Sci. 2021. PMID: 33809708 Free PMC article.

9

Laser-Assisted Surface Modification of Ni Microstructures with Au and Pt toward Cell Biocompatibility and High Enzyme-Free Glucose Sensing.

Khairullina EM, Tumkin II, Stupin DD, Smikhovskaia AV, Mereshchenko AS, Lihachev AI, Vasin AV, Ryazantsev MN, Panov MS. Khairullina EM, et al. Among authors: ryazantsev mn. ACS Omega. 2021 Jul 2;6(28):18099-18109. doi: 10.1021/acsomega.1c01880. eCollection 2021 Jul 20. ACS Omega. 2021. PMID: 34308043 Free PMC article.

10

Free Energy Computation for an Isomerizing Chromophore in a Molecular Cavity via the Average Solvent Electrostatic Configuration Model: Applications in Rhodopsin and Rhodopsin-Mimicking Systems.

Nikolaev DM, Manathunga M, Orozco-Gonzalez Y, Shtyrov AA, Guerrero Martínez YO, Gozem S, Ryazantsev MN, Coutinho K, Canuto S, Olivucci M. Nikolaev DM, et al. Among authors: ryazantsev mn. J Chem Theory Comput. 2021 Sep 14;17(9):5885-5895. doi: 10.1021/acs.jctc.1c00221. Epub 2021 Aug 11. J Chem Theory Comput. 2021. PMID: 34379429

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