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Advancing translational research with the Semantic Web.
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Marshall MS, Ogbuji C, Rees J, Stephens S, Wong GT, Wu E, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheung KH. Ruttenberg A, et al. BMC Bioinformatics. 2007 May 9;8 Suppl 3(Suppl 3):S2. doi: 10.1186/1471-2105-8-S3-S2. BMC Bioinformatics. 2007. PMID: 17493285 Free PMC article. Review.
The SWAN biomedical discourse ontology.
Ciccarese P, Wu E, Wong G, Ocana M, Kinoshita J, Ruttenberg A, Clark T. Ciccarese P, et al. Among authors: ruttenberg a. J Biomed Inform. 2008 Oct;41(5):739-51. doi: 10.1016/j.jbi.2008.04.010. Epub 2008 May 4. J Biomed Inform. 2008. PMID: 18583197 Free PMC article.
Computational knowledge integration in biopharmaceutical research.
Ficenec D, Osborne M, Pradines J, Richards D, Felciano R, Cho RJ, Chen RO, Liefeld T, Owen J, Ruttenberg A, Reich C, Horvath J, Clark T. Ficenec D, et al. Among authors: ruttenberg a. Brief Bioinform. 2003 Sep;4(3):260-78. doi: 10.1093/bib/4.3.260. Brief Bioinform. 2003. PMID: 14582520
Detection of activity centers in cellular pathways using transcript profiling.
Pradines J, Rudolph-Owen L, Hunter J, Leroy P, Cary M, Coopersmith R, Dancik V, Eltsefon Y, Farutin V, Leroy C, Rees J, Rose D, Rowley S, Ruttenberg A, Wieghardt P, Sander C, Reich C. Pradines J, et al. Among authors: ruttenberg a. J Biopharm Stat. 2004 Aug;14(3):701-21. doi: 10.1081/BIP-200025678. J Biopharm Stat. 2004. PMID: 15468760
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.
Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ; OBI Consortium; Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S. Smith B, et al. Among authors: ruttenberg a. Nat Biotechnol. 2007 Nov;25(11):1251-5. doi: 10.1038/nbt1346. Nat Biotechnol. 2007. PMID: 17989687 Free PMC article.
The Ontology for Biomedical Investigations.
Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J. Bandrowski A, et al. Among authors: ruttenberg a. PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016. PLoS One. 2016. PMID: 27128319 Free PMC article.
The representation of protein complexes in the Protein Ontology (PRO).
Bult CJ, Drabkin HJ, Evsikov A, Natale D, Arighi C, Roberts N, Ruttenberg A, D'Eustachio P, Smith B, Blake JA, Wu C. Bult CJ, et al. Among authors: ruttenberg a. BMC Bioinformatics. 2011 Sep 19;12:371. doi: 10.1186/1471-2105-12-371. BMC Bioinformatics. 2011. PMID: 21929785 Free PMC article.
A strategy for building neuroanatomy ontologies.
Osumi-Sutherland D, Reeve S, Mungall CJ, Neuhaus F, Ruttenberg A, Jefferis GS, Armstrong JD. Osumi-Sutherland D, et al. Among authors: ruttenberg a. Bioinformatics. 2012 May 1;28(9):1262-9. doi: 10.1093/bioinformatics/bts113. Epub 2012 Mar 7. Bioinformatics. 2012. PMID: 22402613 Free article.
37 results