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Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course. Pope WH, et al. Among authors: russell da. Elife. 2015 Apr 28;4:e06416. doi: 10.7554/eLife.06416. Elife. 2015. PMID: 25919952 Free PMC article.
Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size.
Hatfull GF, Jacobs-Sera D, Lawrence JG, Pope WH, Russell DA, Ko CC, Weber RJ, Patel MC, Germane KL, Edgar RH, Hoyte NN, Bowman CA, Tantoco AT, Paladin EC, Myers MS, Smith AL, Grace MS, Pham TT, O'Brien MB, Vogelsberger AM, Hryckowian AJ, Wynalek JL, Donis-Keller H, Bogel MW, Peebles CL, Cresawn SG, Hendrix RW. Hatfull GF, et al. Among authors: russell da. J Mol Biol. 2010 Mar 19;397(1):119-43. doi: 10.1016/j.jmb.2010.01.011. Epub 2010 Jan 11. J Mol Biol. 2010. PMID: 20064525 Free PMC article.
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.
Pope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AA, Ares M Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SC, Engelsen AE, English BE, Erb ML, Estrada C, Filliger LZ, Findley AM, Forbes L, Forsyth MH, Fox TM, Fritz MJ, Garcia R, George ZD, Georges AE, Gissendanner CR, Goff S, Goldstein R, Gordon KC, Green RD, Guerra SL, Guiney-Olsen KR, Guiza BG, Haghighat L, Hagopian GV, Harmon CJ, Harmson JS, Hartzog GA, Harvey SE, He S, He KJ, Healy KE, Higinbotham ER, Hildebrandt EN, Ho JH, Hogan GM, Hohenstein VG, Holz NA, Huang VJ, Hufford EL, Hynes PM, Jackson AS, Jansen EC, Jarvik J, Jasinto PG, Jordan TC, Kasza T, Katelyn MA, Kelsey JS, Kerrigan LA, Khaw D, Kim J, Knutter JZ, Ko CC, Larkin GV, Laroche JR, Latif A, Leuba KD, Leuba SI, Lewis LO, Loesser-Casey KE, Long CA, Lopez AJ, Lowery N, Lu T… See abstract for full author list ➔ Pope WH, et al. Among authors: russell da. PLoS One. 2011 Jan 27;6(1):e16329. doi: 10.1371/journal.pone.0016329. PLoS One. 2011. PMID: 21298013 Free PMC article.
Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4.
Pope WH, Ferreira CM, Jacobs-Sera D, Benjamin RC, Davis AJ, DeJong RJ, Elgin SC, Guilfoile FR, Forsyth MH, Harris AD, Harvey SE, Hughes LE, Hynes PM, Jackson AS, Jalal MD, MacMurray EA, Manley CM, McDonough MJ, Mosier JL, Osterbann LJ, Rabinowitz HS, Rhyan CN, Russell DA, Saha MS, Shaffer CD, Simon SE, Sims EF, Tovar IG, Weisser EG, Wertz JT, Weston-Hafer KA, Williamson KE, Zhang B, Cresawn SG, Jain P, Piuri M, Jacobs WR Jr, Hendrix RW, Hatfull GF. Pope WH, et al. Among authors: russell da. PLoS One. 2011;6(10):e26750. doi: 10.1371/journal.pone.0026750. Epub 2011 Oct 28. PLoS One. 2011. PMID: 22053209 Free PMC article.
Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates.
Marinelli LJ, Fitz-Gibbon S, Hayes C, Bowman C, Inkeles M, Loncaric A, Russell DA, Jacobs-Sera D, Cokus S, Pellegrini M, Kim J, Miller JF, Hatfull GF, Modlin RL. Marinelli LJ, et al. Among authors: russell da. mBio. 2012 Sep 25;3(5):e00279-12. doi: 10.1128/mBio.00279-12. Print 2012. mBio. 2012. PMID: 23015740 Free PMC article.
Insights into head-tailed viruses infecting extremely halophilic archaea.
Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Butcher SJ, Bamford DH, Hendrix RW. Pietilä MK, et al. Among authors: russell da. J Virol. 2013 Mar;87(6):3248-60. doi: 10.1128/JVI.03397-12. Epub 2013 Jan 2. J Virol. 2013. PMID: 23283946 Free PMC article.
Snapshot of haloarchaeal tailed virus genomes.
Senčilo A, Jacobs-Sera D, Russell DA, Ko CC, Bowman CA, Atanasova NS, Österlund E, Oksanen HM, Bamford DH, Hatfull GF, Roine E, Hendrix RW. Senčilo A, et al. Among authors: russell da. RNA Biol. 2013 May;10(5):803-16. doi: 10.4161/rna.24045. Epub 2013 Mar 7. RNA Biol. 2013. PMID: 23470522 Free PMC article.
Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story.
Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Hendrix RW, Bamford DH, Butcher SJ. Pietilä MK, et al. Among authors: russell da. Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10604-9. doi: 10.1073/pnas.1303047110. Epub 2013 Jun 3. Proc Natl Acad Sci U S A. 2013. PMID: 23733949 Free PMC article.
Cluster J mycobacteriophages: intron splicing in capsid and tail genes.
Pope WH, Jacobs-Sera D, Best AA, Broussard GW, Connerly PL, Dedrick RM, Kremer TA, Offner S, Ogiefo AH, Pizzorno MC, Rockenbach K, Russell DA, Stowe EL, Stukey J, Thibault SA, Conway JF, Hendrix RW, Hatfull GF. Pope WH, et al. Among authors: russell da. PLoS One. 2013 Jul 9;8(7):e69273. doi: 10.1371/journal.pone.0069273. Print 2013. PLoS One. 2013. PMID: 23874930 Free PMC article.
308 results