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One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads.
PLoS Comput Biol. 2021 Jan 27;17(1):e1008678. doi: 10.1371/journal.pcbi.1008678. eCollection 2021 Jan.
PLoS Comput Biol. 2021.
PMID: 33503026
Free PMC article.
Use of next generation sequencing technologies for the diagnosis and epidemiology of infectious diseases.
Comas I, Cancino-Muñoz I, Mariner-Llicer C, Goig GA, Ruiz-Hueso P, Francés-Cuesta C, García-González N, González-Candelas F.
Comas I, et al. Among authors: ruiz hueso p.
Enferm Infecc Microbiol Clin (Engl Ed). 2020 Jan;38 Suppl 1:32-38. doi: 10.1016/j.eimc.2020.02.006.
Enferm Infecc Microbiol Clin (Engl Ed). 2020.
PMID: 32111363
Review.
English, Spanish.
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Molecular Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Hospital from the Comunidad Valenciana (Spain).
Sánchez-Serrano A, García-González N, Bonillo D, Ruiz-Hueso P, Villanova R, Campo-Bes I, Tormo N, Salvador C, Gimeno C, González-Candelas F.
Sánchez-Serrano A, et al. Among authors: ruiz hueso p.
Microb Drug Resist. 2022 Dec;28(12):1071-1078. doi: 10.1089/mdr.2022.0027. Epub 2022 Oct 11.
Microb Drug Resist. 2022.
PMID: 36251890
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Emergence and dissemination of colistin-resistant Klebsiella pneumoniae isolates expressing OXA-48 plus CTX-M-15 in patients not previously treated with colistin in a Spanish university hospital.
Barragán-Prada H, Ruiz-Hueso P, Tedim AP, González-Candelas F, Galán JC, Cantón R, Morosini MI.
Barragán-Prada H, et al. Among authors: ruiz hueso p.
Diagn Microbiol Infect Dis. 2019 Feb;93(2):147-153. doi: 10.1016/j.diagmicrobio.2018.08.014. Epub 2018 Sep 8.
Diagn Microbiol Infect Dis. 2019.
PMID: 30266401
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Spread of a SARS-CoV-2 variant through Europe in the summer of 2020.
Hodcroft EB, Zuber M, Nadeau S, Vaughan TG, Crawford KHD, Althaus CL, Reichmuth ML, Bowen JE, Walls AC, Corti D, Bloom JD, Veesler D, Mateo D, Hernando A, Comas I, González-Candelas F; SeqCOVID-SPAIN consortium; Stadler T, Neher RA.
Hodcroft EB, et al.
Nature. 2021 Jul;595(7869):707-712. doi: 10.1038/s41586-021-03677-y. Epub 2021 Jun 7.
Nature. 2021.
PMID: 34098568
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The first wave of the COVID-19 epidemic in Spain was associated with early introductions and fast spread of a dominating genetic variant.
López MG, Chiner-Oms Á, García de Viedma D, Ruiz-Rodriguez P, Bracho MA, Cancino-Muñoz I, D'Auria G, de Marco G, García-González N, Goig GA, Gómez-Navarro I, Jiménez-Serrano S, Martinez-Priego L, Ruiz-Hueso P, Ruiz-Roldán L, Torres-Puente M, Alberola J, Albert E, Aranzamendi Zaldumbide M, Bea-Escudero MP, Boga JA, Bordoy AE, Canut-Blasco A, Carvajal A, Cilla Eguiluz G, Cordón Rodríguez ML, Costa-Alcalde JJ, de Toro M, de Toro Peinado I, Del Pozo JL, Duchêne S, Fernández-Pinero J, Fuster Escrivá B, Gimeno Cardona C, González Galán V, Gonzalo Jiménez N, Hernáez Crespo S, Herranz M, Lepe JA, López-Causapé C, López-Hontangas JL, Martín V, Martró E, Milagro Beamonte A, Montes Ros M, Moreno-Muñoz R, Navarro D, Navarro-Marí JM, Not A, Oliver A, Palop-Borrás B, Parra Grande M, Pedrosa-Corral I, Pérez González MC, Pérez-Lago L, Pérez-Ruiz M, Piñeiro Vázquez L, Rabella N, Rezusta A, Robles Fonseca L, Rodríguez-Villodres Á, Sanbonmatsu-Gámez S, Sicilia J, Soriano A, Tirado Balaguer MD, Torres I, Tristancho A, Marimón JM; SeqCOVID-Spain consortium; Coscolla M, González-Candelas F, Comas I.
López MG, et al. Among authors: ruiz hueso p.
Nat Genet. 2021 Oct;53(10):1405-1414. doi: 10.1038/s41588-021-00936-6. Epub 2021 Sep 30.
Nat Genet. 2021.
PMID: 34594042
Free PMC article.
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Evolutionary and Phenotypic Characterization of Two Spike Mutations in European Lineage 20E of SARS-CoV-2.
Ruiz-Rodriguez P, Francés-Gómez C, Chiner-Oms Á, López MG, Jiménez-Serrano S, Cancino-Muñoz I, Ruiz-Hueso P, Torres-Puente M, Bracho MA, D'Auria G, Martinez-Priego L, Guerreiro M, Montero-Alonso M, Gómez MD, Piñana JL; SeqCOVID-SPAIN Consortium; González-Candelas F, Comas I, Marina A, Geller R, Coscolla M.
Ruiz-Rodriguez P, et al. Among authors: ruiz hueso p.
mBio. 2021 Dec 21;12(6):e0231521. doi: 10.1128/mBio.02315-21. Epub 2021 Nov 16.
mBio. 2021.
PMID: 34781748
Free PMC article.
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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.
Alm E, Broberg EK, Connor T, Hodcroft EB, Komissarov AB, Maurer-Stroh S, Melidou A, Neher RA, O'Toole Á, Pereyaslov D; WHO European Region sequencing laboratories and GISAID EpiCoV group; WHO European Region sequencing laboratories and GISAID EpiCoV group*.
Alm E, et al.
Euro Surveill. 2020 Aug;25(32):2001410. doi: 10.2807/1560-7917.ES.2020.25.32.2001410.
Euro Surveill. 2020.
PMID: 32794443
Free PMC article.
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