Rudney JD - Search Results

1

BAL Fluid Metaproteome in Acute Respiratory Failure.

Jagtap PD, Viken KJ, Johnson J, McGowan T, Pendleton KM, Griffin TJ, Hunter RC, Rudney JD, Bhargava M. Jagtap PD, et al. Among authors: rudney jd. Am J Respir Cell Mol Biol. 2018 Nov;59(5):648-652. doi: 10.1165/rcmb.2018-0068LE. Am J Respir Cell Mol Biol. 2018. PMID: 30382775 Free PMC article. No abstract available.

2

Metaproteomic analysis using the Galaxy framework.

Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Jagtap PD, et al. Proteomics. 2015 Oct;15(20):3553-65. doi: 10.1002/pmic.201500074. Epub 2015 Jul 24. Proteomics. 2015. PMID: 26058579

3

metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes.

Easterly CW, Sajulga R, Mehta S, Johnson J, Kumar P, Hubler S, Mesuere B, Rudney J, Griffin TJ, Jagtap PD. Easterly CW, et al. Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S82-S91. doi: 10.1074/mcp.RA118.001240. Epub 2019 Jun 24. Mol Cell Proteomics. 2019. PMID: 31235611 Free PMC article.

4

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries.

Rudney JD, Jagtap PD, Reilly CS, Chen R, Markowski TW, Higgins L, Johnson JE, Griffin TJ. Rudney JD, et al. Microbiome. 2015 Dec 19;3:69. doi: 10.1186/s40168-015-0136-z. Microbiome. 2015. PMID: 26684897 Free PMC article.

5

Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome.

Afiuni-Zadeh S, Boylan KLM, Jagtap PD, Griffin TJ, Rudney JD, Peterson ML, Skubitz APN. Afiuni-Zadeh S, et al. Among authors: rudney jd. Sci Rep. 2018 Jul 18;8(1):10868. doi: 10.1038/s41598-018-29092-4. Sci Rep. 2018. PMID: 30022083 Free PMC article.

6

Deep metaproteomic analysis of human salivary supernatant.

Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD. Jagtap P, et al. Among authors: rudney jd. Proteomics. 2012 Apr;12(7):992-1001. doi: 10.1002/pmic.201100503. Proteomics. 2012. PMID: 22522805 Free PMC article.

7

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD. Blank C, et al. Proteomes. 2018 Jan 31;6(1):7. doi: 10.3390/proteomes6010007. Proteomes. 2018. PMID: 29385081 Free PMC article.

8

Survey of metaproteomics software tools for functional microbiome analysis.

Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, Jagtap PD. Sajulga R, et al. PLoS One. 2020 Nov 10;15(11):e0241503. doi: 10.1371/journal.pone.0241503. eCollection 2020. PLoS One. 2020. PMID: 33170893 Free PMC article.

9

[No title available]

[No authors listed] [No authors listed] PMID: 33451500

10

A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry.

Rudney JD, Xie H, Rhodus NL, Ondrey FG, Griffin TJ. Rudney JD, et al. Mol Oral Microbiol. 2010 Feb;25(1):38-49. doi: 10.1111/j.2041-1014.2009.00558.x. Mol Oral Microbiol. 2010. PMID: 20331792 Free PMC article.

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