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metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes.
Easterly CW, Sajulga R, Mehta S, Johnson J, Kumar P, Hubler S, Mesuere B, Rudney J, Griffin TJ, Jagtap PD. Easterly CW, et al. Among authors: rudney j. Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S82-S91. doi: 10.1074/mcp.RA118.001240. Epub 2019 Jun 24. Mol Cell Proteomics. 2019. PMID: 31235611 Free PMC article.
Metaproteomic analysis using the Galaxy framework.
Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Jagtap PD, et al. Among authors: rudney j. Proteomics. 2015 Oct;15(20):3553-65. doi: 10.1002/pmic.201500074. Epub 2015 Jul 24. Proteomics. 2015. PMID: 26058579
Survey of metaproteomics software tools for functional microbiome analysis.
Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, Jagtap PD. Sajulga R, et al. Among authors: rudney j. PLoS One. 2020 Nov 10;15(11):e0241503. doi: 10.1371/journal.pone.0241503. eCollection 2020. PLoS One. 2020. PMID: 33170893 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 33451500
BAL Fluid Metaproteome in Acute Respiratory Failure.
Jagtap PD, Viken KJ, Johnson J, McGowan T, Pendleton KM, Griffin TJ, Hunter RC, Rudney JD, Bhargava M. Jagtap PD, et al. Among authors: rudney jd. Am J Respir Cell Mol Biol. 2018 Nov;59(5):648-652. doi: 10.1165/rcmb.2018-0068LE. Am J Respir Cell Mol Biol. 2018. PMID: 30382775 Free PMC article. No abstract available.
Deep metaproteomic analysis of human salivary supernatant.
Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD. Jagtap P, et al. Among authors: rudney jd. Proteomics. 2012 Apr;12(7):992-1001. doi: 10.1002/pmic.201100503. Proteomics. 2012. PMID: 22522805 Free PMC article.
83 results