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A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing.
Petrillo M, Fabbri M, Kagkli DM, Querci M, Van den Eede G, Alm E, Aytan-Aktug D, Capella-Gutierrez S, Carrillo C, Cestaro A, Chan KG, Coque T, Endrullat C, Gut I, Hammer P, Kay GL, Madec JY, Mather AE, McHardy AC, Naas T, Paracchini V, Peter S, Pightling A, Raffael B, Rossen J, Ruppé E, Schlaberg R, Vanneste K, Weber LM, Westh H, Angers-Loustau A. Petrillo M, et al. Among authors: rossen j. F1000Res. 2021 Feb 8;10:80. doi: 10.12688/f1000research.39214.2. eCollection 2021. F1000Res. 2021. PMID: 35847383 Free PMC article.
The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.
Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O'Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G. Angers-Loustau A, et al. Among authors: rossen jwa. F1000Res. 2018 Apr 13;7:ISCB Comm J-459. doi: 10.12688/f1000research.14509.2. eCollection 2018. F1000Res. 2018. PMID: 30026930 Free PMC article. Review.
Detection of a small IncX4 plasmid carrying the mcr-1.1 gene in a pig oral fluid sample by shotgun metagenomic sequencing.
Schuele L, Fleres G, Strutzberg-Minder K, Schütze S, Löbert S, Lambrecht C, Harlizius J, Peter S, Rossen JWA, Couto N. Schuele L, et al. Among authors: rossen jwa. J Glob Antimicrob Resist. 2021 Mar;24:205-206. doi: 10.1016/j.jgar.2020.12.020. Epub 2021 Jan 19. J Glob Antimicrob Resist. 2021. PMID: 33482366 Free article. No abstract available.
Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch-German border region.
Schuele L, Lizarazo-Forero E, Strutzberg-Minder K, Schütze S, Löbert S, Lambrecht C, Harlizius J, Friedrich AW, Peter S, Rossen JWA, Couto N. Schuele L, et al. Among authors: rossen jwa. Transbound Emerg Dis. 2022 Jul;69(4):2306-2319. doi: 10.1111/tbed.14249. Epub 2021 Aug 28. Transbound Emerg Dis. 2022. PMID: 34347385 Free PMC article.
375 results