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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.
Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, Lu Z, Wang B, Tello-Ruiz MK, Piri RD, Wang N, Kim DW, Zeng Y, O'Connor CH, Li X, Gilbert AM, Baggs E, Krasileva KV, Portwood JL 2nd, Cannon EKS, Andorf CM, Manchanda N, Snodgrass SJ, Hufnagel DE, Jiang Q, Pedersen S, Syring ML, Kudrna DA, Llaca V, Fengler K, Schmitz RJ, Ross-Ibarra J, Yu J, Gent JI, Hirsch CN, Ware D, Dawe RK. Hufford MB, et al. Science. 2021 Aug 6;373(6555):655-662. doi: 10.1126/science.abg5289. Science. 2021. PMID: 34353948 Free PMC article.
A first-generation haplotype map of maize.
Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Peiffer JA, McMullen MD, Grills GS, Ross-Ibarra J, Ware DH, Buckler ES. Gore MA, et al. Science. 2009 Nov 20;326(5956):1115-7. doi: 10.1126/science.1177837. Science. 2009. PMID: 19965431
Widespread gene conversion in centromere cores.
Shi J, Wolf SE, Burke JM, Presting GG, Ross-Ibarra J, Dawe RK. Shi J, et al. PLoS Biol. 2010 Mar 9;8(3):e1000327. doi: 10.1371/journal.pbio.1000327. PLoS Biol. 2010. PMID: 20231874 Free PMC article.
Megabase-scale inversion polymorphism in the wild ancestor of maize.
Fang Z, Pyhäjärvi T, Weber AL, Dawe RK, Glaubitz JC, González Jde J, Ross-Ibarra C, Doebley J, Morrell PL, Ross-Ibarra J. Fang Z, et al. Genetics. 2012 Jul;191(3):883-94. doi: 10.1534/genetics.112.138578. Epub 2012 Apr 27. Genetics. 2012. PMID: 22542971 Free PMC article.
Maize HapMap2 identifies extant variation from a genome in flux.
Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D. Chia JM, et al. Nat Genet. 2012 Jun 3;44(7):803-7. doi: 10.1038/ng.2313. Nat Genet. 2012. PMID: 22660545
Comparative population genomics of maize domestication and improvement.
Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, Swanson-Wagner RA, Tiffin P, Wang J, Zhang G, Doebley J, McMullen MD, Ware D, Buckler ES, Yang S, Ross-Ibarra J. Hufford MB, et al. Nat Genet. 2012 Jun 3;44(7):808-11. doi: 10.1038/ng.2309. Nat Genet. 2012. PMID: 22660546 Free PMC article.
Reshaping of the maize transcriptome by domestication.
Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM. Swanson-Wagner R, et al. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11878-83. doi: 10.1073/pnas.1201961109. Epub 2012 Jul 2. Proc Natl Acad Sci U S A. 2012. PMID: 22753482 Free PMC article.
114 results