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Page 1
Ensemble Detection of DNA Engineering Signatures.
Adler A, Bader JS, Basnight B, Booth BW, Cai J, Cho E, Collins JH, Ge Y, Grothendieck J, Keating K, Marshall T, Persikov A, Scott H, Siegelmann R, Singh M, Taggart A, Toll B, Wan KH, Wyschogrod D, Yaman F, Young EM, Celniker SE, Roehner N. Adler A, et al. Among authors: roehner n. ACS Synth Biol. 2024 Apr 19;13(4):1105-1115. doi: 10.1021/acssynbio.3c00398. Epub 2024 Mar 12. ACS Synth Biol. 2024. PMID: 38468602
Standardized Representation of Parts and Assembly for Build Planning.
Beal J, Selvarajah V, Chambonnier G, Haddock T, Vignoni A, Vidal G, Roehner N. Beal J, et al. Among authors: roehner n. ACS Synth Biol. 2023 Dec 15;12(12):3646-3655. doi: 10.1021/acssynbio.3c00418. Epub 2023 Nov 13. ACS Synth Biol. 2023. PMID: 37956262
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop.
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, Johnson T, Vaughn MW, Gaffney N, Urrutia J, Gopaulakrishnan S, Biggers V, Higa TR, Mosqueda LA, Gameiro M, Gedeon T, Mischaikow K, Beal J, Bartley B, Mitchell T, Nguyen TT, Roehner N, Haase SB. Cummins B, et al. Among authors: roehner n. Synth Biol (Oxf). 2023 Mar 28;8(1):ysad005. doi: 10.1093/synbio/ysad005. eCollection 2023. Synth Biol (Oxf). 2023. PMID: 37073283 Free PMC article.
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments.
Goldman RP, Moseley R, Roehner N, Cummins B, Vrana JD, Clowers KJ, Bryce D, Beal J, DeHaven M, Nowak J, Higa T, Biggers V, Lee P, Hunt JP, Mosqueda L, Haase SB, Weston M, Zheng G, Deckard A, Gopaulakrishnan S, Stubbs JF, Gaffney NI, Vaughn MW, Maheshri N, Mikhalev E, Bartley B, Markeloff R, Mitchell T, Nguyen T, Sumorok D, Walczak N, Myers C, Zundel Z, Hatch B, Scholz J, Colonna-Romano J. Goldman RP, et al. Among authors: roehner n. Synth Biol (Oxf). 2022 Oct 6;7(1):ysac018. doi: 10.1093/synbio/ysac018. eCollection 2022. Synth Biol (Oxf). 2022. PMID: 36285185 Free PMC article.
Synthetic Biology Curation Tools (SYNBICT).
Roehner N, Mante J, Myers CJ, Beal J. Roehner N, et al. ACS Synth Biol. 2021 Nov 19;10(11):3200-3204. doi: 10.1021/acssynbio.1c00220. Epub 2021 Nov 10. ACS Synth Biol. 2021. PMID: 34757736
Synthetic biology open language visual (SBOL Visual) version 2.3.
Baig H, Fontanarossa P, Kulkarni V, McLaughlin J, Vaidyanathan P, Bartley B, Bhakta S, Bhatia S, Bissell M, Clancy K, Cox RS, Goñi Moreno A, Gorochowski T, Grunberg R, Lee J, Luna A, Madsen C, Misirli G, Nguyen T, Le Novere N, Palchick Z, Pocock M, Roehner N, Sauro H, Scott-Brown J, Sexton JT, Stan GB, Tabor JJ, Terry L, Vazquez Vilar M, Voigt CA, Wipat A, Zong D, Zundel Z, Beal J, Myers C. Baig H, et al. Among authors: roehner n. J Integr Bioinform. 2021 Jun 8;18(3):20200045. doi: 10.1515/jib-2020-0045. J Integr Bioinform. 2021. PMID: 34098590 Free PMC article.
Engineered yeast genomes accurately assembled from pure and mixed samples.
Collins JH, Keating KW, Jones TR, Balaji S, Marsan CB, Çomo M, Newlon ZJ, Mitchell T, Bartley B, Adler A, Roehner N, Young EM. Collins JH, et al. Among authors: roehner n. Nat Commun. 2021 Mar 5;12(1):1485. doi: 10.1038/s41467-021-21656-9. Nat Commun. 2021. PMID: 33674578 Free PMC article.
Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL).
Brown B, Bartley B, Beal J, Bird JE, Goñi-Moreno Á, McLaughlin JA, Mısırlı G, Roehner N, Skelton DJ, Poh CL, Ofiteru ID, James K, Wipat A. Brown B, et al. Among authors: roehner n. ACS Synth Biol. 2020 Sep 18;9(9):2410-2417. doi: 10.1021/acssynbio.0c00176. Epub 2020 Aug 20. ACS Synth Biol. 2020. PMID: 32786354
33 results