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Identification of Huge Phages from Wastewater Metagenomes.
Kallies R, Hu D, Abdulkadir N, Schloter M, Rocha U. Kallies R, et al. Among authors: rocha u. Viruses. 2023 Nov 28;15(12):2330. doi: 10.3390/v15122330. Viruses. 2023. PMID: 38140571 Free PMC article.
MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.
Rocha U, Coelho Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Štefanič P, Bicalho MF, Borim Correa F, Baştürk MN, Fousekis E, Viana Barbosa LM, Plewka J, Probst AJ, Baldrian P, Stadler PF; CLUE-TERRA Consortium. Rocha U, et al. Mol Ecol Resour. 2024 Feb;24(2):e13904. doi: 10.1111/1755-0998.13904. Epub 2023 Nov 23. Mol Ecol Resour. 2024. PMID: 37994269
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater.
Abdulkadir N, Saraiva JP, Zhang J, Stolte S, Gillor O, Harms H, Rocha U. Abdulkadir N, et al. Among authors: rocha u. Microbiol Spectr. 2024 Mar 5;12(3):e0291823. doi: 10.1128/spectrum.02918-23. Epub 2024 Jan 30. Microbiol Spectr. 2024. PMID: 38289113 Free PMC article.
The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes.
Avila Santos AP, Kabiru Nata'ala M, Kasmanas JC, Bartholomäus A, Keller-Costa T, Jurburg SD, Tal T, Camarinha-Silva A, Saraiva JP, Ponce de Leon Ferreira de Carvalho AC, Stadler PF, Sipoli Sanches D, Rocha U. Avila Santos AP, et al. Among authors: rocha u. Anim Microbiome. 2023 Oct 5;5(1):48. doi: 10.1186/s42523-023-00267-3. Anim Microbiome. 2023. PMID: 37798675 Free PMC article.
68 results