Rocha LM - Search Results

1

Classification of protein-protein interaction full-text documents using text and citation network features.

Kolchinsky A, Abi-Haidar A, Kaur J, Hamed AA, Rocha LM. Kolchinsky A, et al. Among authors: rocha lm. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):400-11. doi: 10.1109/TCBB.2010.55. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20671313

2

Large-scale testing of bibliome informatics using Pfam protein families.

Maguitman AG, Rechtsteiner A, Verspoor K, Strauss CE, Rocha LM. Maguitman AG, et al. Among authors: rocha lm. Pac Symp Biocomput. 2006:76-87. Pac Symp Biocomput. 2006. PMID: 17094229 Free article.

3

Agent-based model of genotype editing.

Huang CF, Kaur J, Maguitman A, Rocha LM. Huang CF, et al. Among authors: rocha lm. Evol Comput. 2007 Fall;15(3):253-89. doi: 10.1162/evco.2007.15.3.253. Evol Comput. 2007. PMID: 17705779

4

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks.

Abi-Haidar A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM. Abi-Haidar A, et al. Among authors: rocha lm. Genome Biol. 2008;9 Suppl 2(Suppl 2):S11. doi: 10.1186/gb-2008-9-s2-s11. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834489 Free PMC article.

5

Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions.

Kolchinsky A, Lourenço A, Li L, Rocha LM. Kolchinsky A, et al. Among authors: rocha lm. Pac Symp Biocomput. 2013:409-20. doi: 10.1142/9789814447973_0040. Pac Symp Biocomput. 2013. PMID: 23424145 Free article.

6

Multi-scale integration and predictability in resting state brain activity.

Kolchinsky A, van den Heuvel MP, Griffa A, Hagmann P, Rocha LM, Sporns O, Goñi J. Kolchinsky A, et al. Among authors: rocha lm. Front Neuroinform. 2014 Jul 24;8:66. doi: 10.3389/fninf.2014.00066. eCollection 2014. Front Neuroinform. 2014. PMID: 25104933 Free PMC article.

7

Extraction of pharmacokinetic evidence of drug-drug interactions from the literature.

Kolchinsky A, Lourenço A, Wu HY, Li L, Rocha LM. Kolchinsky A, et al. Among authors: rocha lm. PLoS One. 2015 May 11;10(5):e0122199. doi: 10.1371/journal.pone.0122199. eCollection 2015. PLoS One. 2015. PMID: 25961290 Free PMC article.

8

Modularity and the spread of perturbations in complex dynamical systems.

Kolchinsky A, Gates AJ, Rocha LM. Kolchinsky A, et al. Among authors: rocha lm. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):060801. doi: 10.1103/PhysRevE.92.060801. Epub 2015 Dec 23. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 26764620 Free PMC article.

9

An integrated pharmacokinetics ontology and corpus for text mining.

Wu HY, Karnik S, Subhadarshini A, Wang Z, Philips S, Han X, Chiang C, Liu L, Boustani M, Rocha LM, Quinney SK, Flockhart D, Li L. Wu HY, et al. Among authors: rocha lm. BMC Bioinformatics. 2013 Feb 1;14:35. doi: 10.1186/1471-2105-14-35. BMC Bioinformatics. 2013. PMID: 23374886 Free PMC article.

10

Translational drug-interaction corpus.

Zhang S, Wu H, Wang L, Zhang G, Rocha LM, Shatkay H, Li L. Zhang S, et al. Among authors: rocha lm. Database (Oxford). 2022 May 18;2022:baac031. doi: 10.1093/database/baac031. Database (Oxford). 2022. PMID: 35616099 Free PMC article.

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