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Updating RNA-Seq analyses after re-annotation.
Roberts A, Schaeffer L, Pachter L. Roberts A, et al. Bioinformatics. 2013 Jul 1;29(13):1631-7. doi: 10.1093/bioinformatics/btt197. Epub 2013 May 14. Bioinformatics. 2013. PMID: 23677943 Free PMC article.
Fragment assignment in the cloud with eXpress-D.
Roberts A, Feng H, Pachter L. Roberts A, et al. BMC Bioinformatics. 2013 Dec 7;14:358. doi: 10.1186/1471-2105-14-358. BMC Bioinformatics. 2013. PMID: 24314033 Free PMC article.
Quantifying uniformity of mapped reads.
Hower V, Starfield R, Roberts A, Pachter L. Hower V, et al. Among authors: roberts a. Bioinformatics. 2012 Oct 15;28(20):2680-2. doi: 10.1093/bioinformatics/bts451. Epub 2012 Jul 18. Bioinformatics. 2012. PMID: 22815359 Free PMC article.
Fast statistical alignment.
Bradley RK, Roberts A, Smoot M, Juvekar S, Do J, Dewey C, Holmes I, Pachter L. Bradley RK, et al. Among authors: roberts a. PLoS Comput Biol. 2009 May;5(5):e1000392. doi: 10.1371/journal.pcbi.1000392. Epub 2009 May 29. PLoS Comput Biol. 2009. PMID: 19478997 Free PMC article.
5,609 results