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dipwmsearch: a Python package for searching di-PWM motifs.
Mille M, Ripoll J, Cazaux B, Rivals E. Mille M, et al. Among authors: rivals e. Bioinformatics. 2023 Apr 3;39(4):btad141. doi: 10.1093/bioinformatics/btad141. Bioinformatics. 2023. PMID: 37010504 Free PMC article.
Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model.
Chevalier C, Dorignac J, Ibrahim Y, Choquet A, David A, Ripoll J, Rivals E, Geniet F, Walliser NO, Palmeri J, Parmeggiani A, Walter JC. Chevalier C, et al. Among authors: rivals e. PLoS Comput Biol. 2023 Oct 20;19(10):e1011522. doi: 10.1371/journal.pcbi.1011522. eCollection 2023 Oct. PLoS Comput Biol. 2023. PMID: 37862386 Free PMC article.
Computing Phylo- k-Mers.
Romashchenko N, Linard B, Rivals E, Pardi F. Romashchenko N, et al. Among authors: rivals e. IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):2889-2897. doi: 10.1109/TCBB.2023.3278049. Epub 2023 Oct 9. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 37204943
Multivariate Analysis of RNA Chemistry Marks Uncovers Epitranscriptomics-Based Biomarker Signature for Adult Diffuse Glioma Diagnostics.
Relier S, Amalric A, Attina A, Koumare IB, Rigau V, Burel Vandenbos F, Fontaine D, Baroncini M, Hugnot JP, Duffau H, Bauchet L, Hirtz C, Rivals E, David A. Relier S, et al. Among authors: rivals e. Anal Chem. 2022 Sep 6;94(35):11967-11972. doi: 10.1021/acs.analchem.2c01526. Epub 2022 Aug 23. Anal Chem. 2022. PMID: 35998076 Free PMC article.
Alteration of ribosome function upon 5-fluorouracil treatment favors cancer cell drug-tolerance.
Therizols G, Bash-Imam Z, Panthu B, Machon C, Vincent A, Ripoll J, Nait-Slimane S, Chalabi-Dchar M, Gaucherot A, Garcia M, Laforêts F, Marcel V, Boubaker-Vitre J, Monet MA, Bouclier C, Vanbelle C, Souahlia G, Berthel E, Albaret MA, Mertani HC, Prudhomme M, Bertrand M, David A, Saurin JC, Bouvet P, Rivals E, Ohlmann T, Guitton J, Dalla Venezia N, Pannequin J, Catez F, Diaz JJ. Therizols G, et al. Among authors: rivals e. Nat Commun. 2022 Jan 10;13(1):173. doi: 10.1038/s41467-021-27847-8. Nat Commun. 2022. PMID: 35013311 Free PMC article.
FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell.
Relier S, Ripoll J, Guillorit H, Amalric A, Achour C, Boissière F, Vialaret J, Attina A, Debart F, Choquet A, Macari F, Marchand V, Motorin Y, Samalin E, Vasseur JJ, Pannequin J, Aguilo F, Lopez-Crapez E, Hirtz C, Rivals E, Bastide A, David A. Relier S, et al. Among authors: rivals e. Nat Commun. 2021 Mar 19;12(1):1716. doi: 10.1038/s41467-021-21758-4. Nat Commun. 2021. PMID: 33741917 Free PMC article.
51 results