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Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing.
Keniry A, Gearing LJ, Jansz N, Liu J, Holik AZ, Hickey PF, Kinkel SA, Moore DL, Breslin K, Chen K, Liu R, Phillips C, Pakusch M, Biben C, Sheridan JM, Kile BT, Carmichael C, Ritchie ME, Hilton DJ, Blewitt ME. Keniry A, et al. Among authors: ritchie me. Epigenetics Chromatin. 2016 May 18;9:16. doi: 10.1186/s13072-016-0064-6. eCollection 2016. Epigenetics Chromatin. 2016. PMID: 27195021 Free PMC article.
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. Law CW, et al. Among authors: ritchie me. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. eCollection 2016. F1000Res. 2016. PMID: 27441086 Free PMC article.
Deciphering the Innate Lymphoid Cell Transcriptional Program.
Seillet C, Mielke LA, Amann-Zalcenstein DB, Su S, Gao J, Almeida FF, Shi W, Ritchie ME, Naik SH, Huntington ND, Carotta S, Belz GT. Seillet C, et al. Among authors: ritchie me. Cell Rep. 2016 Oct 4;17(2):436-447. doi: 10.1016/j.celrep.2016.09.025. Cell Rep. 2016. PMID: 27705792 Free article.
Glimma: interactive graphics for gene expression analysis.
Su S, Law CW, Ah-Cann C, Asselin-Labat ML, Blewitt ME, Ritchie ME. Su S, et al. Among authors: ritchie me. Bioinformatics. 2017 Jul 1;33(13):2050-2052. doi: 10.1093/bioinformatics/btx094. Bioinformatics. 2017. PMID: 28203714 Free PMC article.
Easy and efficient ensemble gene set testing with EGSEA.
Alhamdoosh M, Law CW, Tian L, Sheridan JM, Ng M, Ritchie ME. Alhamdoosh M, et al. Among authors: ritchie me. F1000Res. 2017 Nov 14;6:2010. doi: 10.12688/f1000research.12544.1. eCollection 2017. F1000Res. 2017. PMID: 29333246 Free PMC article.
175 results