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The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools.
Dong X, Tian L, Gouil Q, Kariyawasam H, Su S, De Paoli-Iseppi R, Prawer YDJ, Clark MB, Breslin K, Iminitoff M, Blewitt ME, Law CW, Ritchie ME. Dong X, et al. Among authors: ritchie me. NAR Genom Bioinform. 2021 Apr 26;3(2):lqab028. doi: 10.1093/nargab/lqab028. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 33937765 Free PMC article.
Sensitization of BCL-2-expressing breast tumors to chemotherapy by the BH3 mimetic ABT-737.
Oakes SR, Vaillant F, Lim E, Lee L, Breslin K, Feleppa F, Deb S, Ritchie ME, Takano E, Ward T, Fox SB, Generali D, Smyth GK, Strasser A, Huang DC, Visvader JE, Lindeman GJ. Oakes SR, et al. Among authors: ritchie me. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2766-71. doi: 10.1073/pnas.1104778108. Epub 2011 Jul 18. Proc Natl Acad Sci U S A. 2012. PMID: 21768359 Free PMC article.
Genome-wide binding and mechanistic analyses of Smchd1-mediated epigenetic regulation.
Chen K, Hu J, Moore DL, Liu R, Kessans SA, Breslin K, Lucet IS, Keniry A, Leong HS, Parish CL, Hilton DJ, Lemmers RJ, van der Maarel SM, Czabotar PE, Dobson RC, Ritchie ME, Kay GF, Murphy JM, Blewitt ME. Chen K, et al. Among authors: ritchie me. Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):E3535-44. doi: 10.1073/pnas.1504232112. Epub 2015 Jun 19. Proc Natl Acad Sci U S A. 2015. PMID: 26091879 Free PMC article.
Transcriptional profiling of the epigenetic regulator Smchd1.
Liu R, Chen K, Jansz N, Blewitt ME, Ritchie ME. Liu R, et al. Among authors: ritchie me. Genom Data. 2015 Dec 31;7:144-7. doi: 10.1016/j.gdata.2015.12.027. eCollection 2016 Mar. Genom Data. 2015. PMID: 26981392 Free PMC article.
175 results