Risso D - Search Results

1

A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development.

Modzelewski AJ, Shao W, Chen J, Lee A, Qi X, Noon M, Tjokro K, Sales G, Biton A, Anand A, Speed TP, Xuan Z, Wang T, Risso D, He L. Modzelewski AJ, et al. Among authors: risso d. Cell. 2021 Oct 28;184(22):5541-5558.e22. doi: 10.1016/j.cell.2021.09.021. Epub 2021 Oct 12. Cell. 2021. PMID: 34644528 Free PMC article.

2

Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.

Martini P, Risso D, Sales G, Romualdi C, Lanfranchi G, Cagnin S. Martini P, et al. Among authors: risso d. BMC Bioinformatics. 2011 Apr 11;12:92. doi: 10.1186/1471-2105-12-92. BMC Bioinformatics. 2011. PMID: 21481242 Free PMC article.

3

Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron.

Ferreira T, Wilson SR, Choi YG, Risso D, Dudoit S, Speed TP, Ngai J. Ferreira T, et al. Among authors: risso d. Neuron. 2014 Feb 19;81(4):847-59. doi: 10.1016/j.neuron.2014.01.001. Neuron. 2014. PMID: 24559675 Free PMC article.

4

Normalization of RNA-seq data using factor analysis of control genes or samples.

Risso D, Ngai J, Speed TP, Dudoit S. Risso D, et al. Nat Biotechnol. 2014 Sep;32(9):896-902. doi: 10.1038/nbt.2931. Epub 2014 Aug 24. Nat Biotechnol. 2014. PMID: 25150836 Free PMC article.

5

How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.

Peixoto L, Risso D, Poplawski SG, Wimmer ME, Speed TP, Wood MA, Abel T. Peixoto L, et al. Among authors: risso d. Nucleic Acids Res. 2015 Sep 18;43(16):7664-74. doi: 10.1093/nar/gkv736. Epub 2015 Jul 21. Nucleic Acids Res. 2015. PMID: 26202970 Free PMC article.

6

Contextual fear conditioning induces differential alternative splicing.

Poplawski SG, Peixoto L, Porcari GS, Wimmer ME, McNally AG, Mizuno K, Giese KP, Chatterjee S, Koberstein JN, Risso D, Speed TP, Abel T. Poplawski SG, et al. Among authors: risso d. Neurobiol Learn Mem. 2016 Oct;134 Pt B(Pt B):221-35. doi: 10.1016/j.nlm.2016.07.018. Epub 2016 Jul 20. Neurobiol Learn Mem. 2016. PMID: 27451143 Free PMC article.

7

Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex.

Gerstner JR, Koberstein JN, Watson AJ, Zapero N, Risso D, Speed TP, Frank MG, Peixoto L. Gerstner JR, et al. Among authors: risso d. BMC Genomics. 2016 Oct 25;17(Suppl 8):727. doi: 10.1186/s12864-016-3065-8. BMC Genomics. 2016. PMID: 27801296 Free PMC article.

8

Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells.

Choi YJ, Lin CP, Risso D, Chen S, Kim TA, Tan MH, Li JB, Wu Y, Chen C, Xuan Z, Macfarlan T, Peng W, Lloyd KC, Kim SY, Speed TP, He L. Choi YJ, et al. Among authors: risso d. Science. 2017 Feb 10;355(6325):eaag1927. doi: 10.1126/science.aag1927. Epub 2017 Jan 12. Science. 2017. PMID: 28082412 Free PMC article.

9

NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data.

Agostinis F, Romualdi C, Sales G, Risso D. Agostinis F, et al. Among authors: risso d. Bioinformatics. 2022 Apr 28;38(9):2648-2650. doi: 10.1093/bioinformatics/btac149. Bioinformatics. 2022. PMID: 35266509 Free PMC article.

10

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain.

Joglekar A, Prjibelski A, Mahfouz A, Collier P, Lin S, Schlusche AK, Marrocco J, Williams SR, Haase B, Hayes A, Chew JG, Weisenfeld NI, Wong MY, Stein AN, Hardwick SA, Hunt T, Wang Q, Dieterich C, Bent Z, Fedrigo O, Sloan SA, Risso D, Jarvis ED, Flicek P, Luo W, Pitt GS, Frankish A, Smit AB, Ross ME, Tilgner HU. Joglekar A, et al. Among authors: risso d. Nat Commun. 2021 Jan 19;12(1):463. doi: 10.1038/s41467-020-20343-5. Nat Commun. 2021. PMID: 33469025 Free PMC article.

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