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gcType: a high-quality type strain genome database for microbial phylogenetic and functional research.
Shi W, Sun Q, Fan G, Hideaki S, Moriya O, Itoh T, Zhou Y, Cai M, Kim SG, Lee JS, Sedlacek I, Arahal DR, Lucena T, Kawasaki H, Evtushenko L, Weir BS, Alexander S, Dénes D, Tanasupawat S, Eurwilaichitr L, Ingsriswang S, Gomez-Gil B, Hazbón MH, Riojas MA, Suwannachart C, Yao S, Vandamme P, Peng F, Chen Z, Liu D, Sun X, Zhang X, Zhou Y, Meng Z, Wu L, Ma J. Shi W, et al. Among authors: riojas ma. Nucleic Acids Res. 2021 Jan 8;49(D1):D694-D705. doi: 10.1093/nar/gkaa957. Nucleic Acids Res. 2021. PMID: 33119759 Free PMC article.
Mycobacterial biomaterials and resources for researchers.
Hazbón MH, Rigouts L, Schito M, Ezewudo M, Kudo T, Itoh T, Ohkuma M, Kiss K, Wu L, Ma J, Hamada M, Strong M, Salfinger M, Daley CL, Nick JA, Lee JS, Rastogi N, Couvin D, Hurtado-Ortiz R, Bizet C, Suresh A, Rodwell T, Albertini A, Lacourciere KA, Deheer-Graham A, Alexander S, Russell JE, Bradford R, Riojas MA. Hazbón MH, et al. Among authors: riojas ma. Pathog Dis. 2018 Jun 1;76(4):fty042. doi: 10.1093/femspd/fty042. Pathog Dis. 2018. PMID: 29846561 Free PMC article. Review.
Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis.
Riojas MA, McGough KJ, Rider-Riojas CJ, Rastogi N, Hazbón MH. Riojas MA, et al. Int J Syst Evol Microbiol. 2018 Jan;68(1):324-332. doi: 10.1099/ijsem.0.002507. Epub 2017 Dec 5. Int J Syst Evol Microbiol. 2018. PMID: 29205127
Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies.
Yarmosh DA, Lopera JG, Puthuveetil NP, Combs PF, Reese AL, Tabron C, Pierola AE, Duncan J, Greenfield SR, Marlow R, King S, Riojas MA, Bagnoli J, Benton B, Jacobs JL. Yarmosh DA, et al. Among authors: riojas ma. mSphere. 2022 Jun 29;7(3):e0007722. doi: 10.1128/msphere.00077-22. Epub 2022 May 2. mSphere. 2022. PMID: 35491842 Free PMC article.
The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance.
Benton B, King S, Greenfield SR, Puthuveetil N, Reese AL, Duncan J, Marlow R, Tabron C, Pierola AE, Yarmosh DA Jr, Combs PF, Riojas MA, Bagnoli J, Jacobs JL. Benton B, et al. Among authors: riojas ma. Microbiol Resour Announc. 2021 Nov 24;10(47):e0081821. doi: 10.1128/MRA.00818-21. Epub 2021 Nov 24. Microbiol Resour Announc. 2021. PMID: 34817215 Free PMC article.
Culturing Mycobacteria.
Wallace E, Hendrickson D, Tolli N, Mehaffy C, Peña M, Nick JA, Knabenbaur P, Watkins J, Simpson A, Amin AG, Chatterjee D, Dobos KM, Lahiri R, Adams L, Strong M, Salfinger M, Bradford R, Stedman TT, Riojas MA, Hazbón MH. Wallace E, et al. Among authors: riojas ma. Methods Mol Biol. 2021;2314:1-58. doi: 10.1007/978-1-0716-1460-0_1. Methods Mol Biol. 2021. PMID: 34235647
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