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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium; Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Bowers RM, et al. Among authors: rinke c. Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893. Nat Biotechnol. 2017. PMID: 28787424 Free PMC article.
The importance of designating type material for uncultured taxa.
Chuvochina M, Rinke C, Parks DH, Rappé MS, Tyson GW, Yilmaz P, Whitman WB, Hugenholtz P. Chuvochina M, et al. Among authors: rinke c. Syst Appl Microbiol. 2019 Jan;42(1):15-21. doi: 10.1016/j.syapm.2018.07.003. Epub 2018 Jul 18. Syst Appl Microbiol. 2019. PMID: 30098831 Free article.
A complete domain-to-species taxonomy for Bacteria and Archaea.
Parks DH, Chuvochina M, Chaumeil PA, Rinke C, Mussig AJ, Hugenholtz P. Parks DH, et al. Among authors: rinke c. Nat Biotechnol. 2020 Sep;38(9):1079-1086. doi: 10.1038/s41587-020-0501-8. Epub 2020 Apr 27. Nat Biotechnol. 2020. PMID: 32341564
A standardized archaeal taxonomy for the Genome Taxonomy Database.
Rinke C, Chuvochina M, Mussig AJ, Chaumeil PA, Davín AA, Waite DW, Whitman WB, Parks DH, Hugenholtz P. Rinke C, et al. Nat Microbiol. 2021 Jul;6(7):946-959. doi: 10.1038/s41564-021-00918-8. Epub 2021 Jun 21. Nat Microbiol. 2021. PMID: 34155373
77 results