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Machine learning methods for predictive proteomics.
Barla A, Jurman G, Riccadonna S, Merler S, Chierici M, Furlanello C. Barla A, et al. Among authors: riccadonna s. Brief Bioinform. 2008 Mar;9(2):119-28. doi: 10.1093/bib/bbn008. Epub 2008 Feb 29. Brief Bioinform. 2008. PMID: 18310105 Review.
Algebraic comparison of partial lists in bioinformatics.
Jurman G, Riccadonna S, Visintainer R, Furlanello C. Jurman G, et al. Among authors: riccadonna s. PLoS One. 2012;7(5):e36540. doi: 10.1371/journal.pone.0036540. Epub 2012 May 17. PLoS One. 2012. PMID: 22615778 Free PMC article.
Stability in GRN Inference.
Jurman G, Filosi M, Visintainer R, Riccadonna S, Furlanello C. Jurman G, et al. Among authors: riccadonna s. Methods Mol Biol. 2019;1883:323-346. doi: 10.1007/978-1-4939-8882-2_14. Methods Mol Biol. 2019. PMID: 30547407
Stability indicators in network reconstruction.
Filosi M, Visintainer R, Riccadonna S, Jurman G, Furlanello C. Filosi M, et al. Among authors: riccadonna s. PLoS One. 2014 Feb 27;9(2):e89815. doi: 10.1371/journal.pone.0089815. eCollection 2014. PLoS One. 2014. PMID: 24587057 Free PMC article.
DTW-MIC Coexpression Networks from Time-Course Data.
Riccadonna S, Jurman G, Visintainer R, Filosi M, Furlanello C. Riccadonna S, et al. PLoS One. 2016 Mar 31;11(3):e0152648. doi: 10.1371/journal.pone.0152648. eCollection 2016. PLoS One. 2016. PMID: 27031641 Free PMC article.
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.
Wang C, Gong B, Bushel PR, Thierry-Mieg J, Thierry-Mieg D, Xu J, Fang H, Hong H, Shen J, Su Z, Meehan J, Li X, Yang L, Li H, Łabaj PP, Kreil DP, Megherbi D, Gaj S, Caiment F, van Delft J, Kleinjans J, Scherer A, Devanarayan V, Wang J, Yang Y, Qian HR, Lancashire LJ, Bessarabova M, Nikolsky Y, Furlanello C, Chierici M, Albanese D, Jurman G, Riccadonna S, Filosi M, Visintainer R, Zhang KK, Li J, Hsieh JH, Svoboda DL, Fuscoe JC, Deng Y, Shi L, Paules RS, Auerbach SS, Tong W. Wang C, et al. Among authors: riccadonna s. Nat Biotechnol. 2014 Sep;32(9):926-32. doi: 10.1038/nbt.3001. Epub 2014 Aug 24. Nat Biotechnol. 2014. PMID: 25150839 Free PMC article.
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, J… See abstract for full author list ➔ Shi L, et al. Among authors: riccadonna s. Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30. Nat Biotechnol. 2010. PMID: 20676074 Free PMC article.
Clinical value of prognosis gene expression signatures in colorectal cancer: a systematic review.
Sanz-Pamplona R, Berenguer A, Cordero D, Riccadonna S, Solé X, Crous-Bou M, Guinó E, Sanjuan X, Biondo S, Soriano A, Jurman G, Capella G, Furlanello C, Moreno V. Sanz-Pamplona R, et al. Among authors: riccadonna s. PLoS One. 2012;7(11):e48877. doi: 10.1371/journal.pone.0048877. Epub 2012 Nov 7. PLoS One. 2012. PMID: 23145004 Free PMC article. Review.
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