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Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli.
Oliveira SM, Neeli-Venkata R, Goncalves NS, Santinha JA, Martins L, Tran H, Mäkelä J, Gupta A, Barandas M, Häkkinen A, Lloyd-Price J, Fonseca JM, Ribeiro AS. Oliveira SM, et al. Among authors: ribeiro as. Mol Microbiol. 2016 Feb;99(4):686-99. doi: 10.1111/mmi.13257. Epub 2015 Nov 17. Mol Microbiol. 2016. PMID: 26507787 Free article.
SGN Sim, a stochastic genetic networks simulator.
Ribeiro AS, Lloyd-Price J. Ribeiro AS, et al. Bioinformatics. 2007 Mar 15;23(6):777-9. doi: 10.1093/bioinformatics/btm004. Epub 2007 Jan 31. Bioinformatics. 2007. PMID: 17267430
CellLine, a stochastic cell lineage simulator.
Ribeiro AS, Charlebois DA, Lloyd-Price J. Ribeiro AS, et al. Bioinformatics. 2007 Dec 15;23(24):3409-11. doi: 10.1093/bioinformatics/btm491. Epub 2007 Oct 9. Bioinformatics. 2007. PMID: 17928303
Quantifying local structure effects in network dynamics.
Ribeiro AS, Lloyd-Price J, Kesseli J, Häkkinen A, Yli-Harja O. Ribeiro AS, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Nov;78(5 Pt 2):056108. doi: 10.1103/PhysRevE.78.056108. Epub 2008 Nov 24. Phys Rev E Stat Nonlin Soft Matter Phys. 2008. PMID: 19113191
Effects of transcriptional pausing on gene expression dynamics.
Rajala T, Häkkinen A, Healy S, Yli-Harja O, Ribeiro AS. Rajala T, et al. Among authors: ribeiro as. PLoS Comput Biol. 2010 Mar 12;6(3):e1000704. doi: 10.1371/journal.pcbi.1000704. PLoS Comput Biol. 2010. PMID: 20300642 Free PMC article.
Effects of the promoter open complex formation on gene expression dynamics.
Ribeiro AS, Häkkinen A, Mannerström H, Lloyd-Price J, Yli-Harja O. Ribeiro AS, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jan;81(1 Pt 1):011912. doi: 10.1103/PhysRevE.81.011912. Epub 2010 Jan 22. Phys Rev E Stat Nonlin Soft Matter Phys. 2010. PMID: 20365404
Dynamical effects of transcriptional pause-prone sites.
Ribeiro AS, Häkkinen A, Healy S, Yli-Harja O. Ribeiro AS, et al. Comput Biol Chem. 2010 Jun;34(3):143-8. doi: 10.1016/j.compbiolchem.2010.04.003. Epub 2010 May 9. Comput Biol Chem. 2010. PMID: 20537588
334 results